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15k
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Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
7 months ago by Jalil Sharif ▴ 80
1
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3
replies
697
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differential gene expression gene names/id vs transcript id
volcano-plot
updated 16 months ago by 85k • written 16 months ago by ▴ 80
3
votes
3
replies
712
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DESeq2: "model matrix is not full rank"
deseq2
updated 17 months ago by 10k • written 17 months ago by ▴ 80
0
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0
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388
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extracting gencode 3utr and 5utr as part of R pipeline
5utr 3utr
18 months ago by Jalil Sharif ▴ 80
0
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9
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1.9k
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Intersecting transcriptome bam file with GTF file
findoverlaps bedtools transcriptome
updated 18 months ago by ★ 1.3k • written 18 months ago by ▴ 80
0
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0
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1.9k
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Comment: Comment: Intersecting transcriptome bam file with GTF file
18 months ago by Jalil Sharif ▴ 80
0
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1
reply
1.9k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
18 months ago by Jalil Sharif ▴ 80
0
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2
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1.9k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
18 months ago by Jalil Sharif ▴ 80
0
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0
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1.6k
views
Comment: Comment: samtools and Rsamtools in r
18 months ago by Jalil Sharif ▴ 80
0
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6
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1.6k
views
samtools and Rsamtools in r
samtools
updated 17 months ago by 44k • written 18 months ago by ▴ 80
0
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1
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1.6k
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Comment: Comment: samtools and Rsamtools in r
18 months ago by Jalil Sharif ▴ 80
0
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0
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1.6k
views
Comment: Comment: samtools and Rsamtools in r
18 months ago by Jalil Sharif ▴ 80
6
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7
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1.3k
views
extracting data from single end aligned bam file - chromosome, strand, start and stop from cigar
bam
updated 18 months ago by 101k • written 18 months ago by ▴ 80
2
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0
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1.3k
views
Answer: Answer: extracting data from single end aligned bam file - chromosome, strand, start and
18 months ago by Jalil Sharif ▴ 80
0
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0
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1.3k
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Comment: Comment: extracting data from single end aligned bam file - chromosome, strand, start and
18 months ago by Jalil Sharif ▴ 80
0
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0
replies
1.1k
views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
20 months ago by Jalil Sharif ▴ 80
0
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1
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1.1k
views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
20 months ago by Jalil Sharif ▴ 80
2
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4
replies
1.1k
views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
20 months ago by Jalil Sharif ▴ 80
6
votes
12
replies
2.9k
views
6 follow
gtf2bed not converting to bed
bed gtf
updated 20 months ago by 8.9k • written 20 months ago by ▴ 80
0
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0
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2.9k
views
Comment: Comment: gtf2bed not converting to bed
20 months ago by Jalil Sharif ▴ 80
0
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0
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927
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
21 months ago by Jalil Sharif ▴ 80
3
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4
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927
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Ensembl equivalent of refseq transcript fasta
ensembl transcriptome refseq
21 months ago by Jalil Sharif ▴ 80
0
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0
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927
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Comment: Comment: Ensembl equivalent of refseq transcript fasta
21 months ago by Jalil Sharif ▴ 80
0
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1
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1.1k
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short read aligners 25-50bp BWA vs BWA-MEM vs Bowtie vs Bowtie2
alignment read short
updated 22 months ago by 7.0k • written 22 months ago by ▴ 80
0
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0
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860
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Comment: Comment: differential gene expression pipelines rnaflow vs rnaseq
22 months ago by Jalil Sharif ▴ 80
0
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2
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860
views
differential gene expression pipelines rnaflow vs rnaseq
differential expression gene
22 months ago by Jalil Sharif ▴ 80
0
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0
replies
464
views
bowtie2 code to bwa-mem2
bwa-mem2 bowtie2
22 months ago by Jalil Sharif ▴ 80
1
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1
reply
1.7k
views
Extracting Beta, SE and P-Value from GLM model
beta glm r
updated 2.3 years ago by 4.6k • written 2.3 years ago by ▴ 80
0
votes
1
reply
514
views
Annotation SNP's with their Gene names
Gene annotations
updated 2.5 years ago by 2.9k • written 2.5 years ago by ▴ 80
0
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0
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534
views
PLINK - PRS/GRS .fam file has fewer tokens
plink fam PRS
updated 20 months ago by 44k • written 2.7 years ago by ▴ 80
0
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0
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952
views
Comment: Comment: How to find top-hit SNP from gwas.
2.7 years ago by Jalil Sharif ▴ 80
1
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3
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952
views
How to find top-hit SNP from gwas.
SNP GWAS tophits
2.7 years ago by Jalil Sharif ▴ 80
0
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1
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2.9k
views
Comment: Comment: Clumping error Plink
2.9 years ago by Jalil Sharif ▴ 80
0
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3
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2.9k
views
Clumping error Plink
clumping plink biobank uk
updated 2.9 years ago by ★ 4.8k • written 2.9 years ago by ▴ 80
0
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0
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1.1k
views
Comment: Comment: UK Biobank difference in number of patients diagnosed in field 41270 vs extracte
2.9 years ago by Jalil Sharif ▴ 80
0
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2
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1.1k
views
UK Biobank difference in number of patients diagnosed in field 41270 vs extracted phenotypes.
Field Diagnosis UK Biobank
2.9 years ago by Jalil Sharif ▴ 80
0
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0
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1.3k
views
Comment: Comment: Averaging across multiple columns
3.0 years ago by Jalil Sharif ▴ 80
2
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1
reply
1.3k
views
Answer: Answer: Averaging across multiple columns
3.0 years ago by Jalil Sharif ▴ 80
4
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5
replies
1.3k
views
Averaging across multiple columns
awk bash column
3.0 years ago by Jalil Sharif ▴ 80
3
votes
0
replies
8.1k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
3.0 years ago by Jalil Sharif ▴ 80
4
votes
6
replies
8.1k
views
merging multiple .bed /.bgen files uk biobank using plink
plink uk biobank merge-list
3.0 years ago by Jalil Sharif ▴ 80
0
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1
reply
8.1k
views
Answer: Answer: merging multiple .bed /.bgen files uk biobank using plink
3.1 years ago by Jalil Sharif ▴ 80
0
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1
reply
8.1k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
3.1 years ago by Jalil Sharif ▴ 80
1
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15
replies
4.7k
views
PRS in UK Biobank - no covariate file and no phenotype file
UK Biobank PRS
3.1 years ago by Jalil Sharif ▴ 80
0
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0
replies
4.7k
views
Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
3.1 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
3.2 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
3.2 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.7k
views
Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
3.2 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
3.2 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
4.7k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
3.2 years ago by Jalil Sharif ▴ 80
53 results • Page 1 of 2
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