Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
15k
views
Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
9 months ago by Jalil Sharif ▴ 80
1
vote
3
replies
745
views
differential gene expression gene names/id vs transcript id
volcano-plot
updated 19 months ago by 86k • written 19 months ago by ▴ 80
3
votes
3
replies
792
views
DESeq2: "model matrix is not full rank"
deseq2
updated 19 months ago by 10k • written 19 months ago by ▴ 80
0
votes
0
replies
424
views
extracting gencode 3utr and 5utr as part of R pipeline
5utr 3utr
21 months ago by Jalil Sharif ▴ 80
0
votes
9
replies
2.1k
views
Intersecting transcriptome bam file with GTF file
findoverlaps bedtools transcriptome
updated 21 months ago by ★ 1.3k • written 21 months ago by ▴ 80
0
votes
0
replies
2.1k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
21 months ago by Jalil Sharif ▴ 80
0
votes
1
reply
2.1k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
21 months ago by Jalil Sharif ▴ 80
0
votes
2
replies
2.1k
views
Comment: Comment: Intersecting transcriptome bam file with GTF file
21 months ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.8k
views
Comment: Comment: samtools and Rsamtools in r
21 months ago by Jalil Sharif ▴ 80
0
votes
6
replies
1.8k
views
samtools and Rsamtools in r
samtools
updated 20 months ago by 44k • written 21 months ago by ▴ 80
0
votes
1
reply
1.8k
views
Comment: Comment: samtools and Rsamtools in r
21 months ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.8k
views
Comment: Comment: samtools and Rsamtools in r
21 months ago by Jalil Sharif ▴ 80
6
votes
7
replies
1.4k
views
extracting data from single end aligned bam file - chromosome, strand, start and stop from cigar
bam
updated 21 months ago by 102k • written 21 months ago by ▴ 80
2
votes
0
replies
1.4k
views
Answer: Answer: extracting data from single end aligned bam file - chromosome, strand, start and
21 months ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.4k
views
Comment: Comment: extracting data from single end aligned bam file - chromosome, strand, start and
21 months ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.3k
views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
23 months ago by Jalil Sharif ▴ 80
0
votes
1
reply
1.3k
views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
23 months ago by Jalil Sharif ▴ 80
2
votes
4
replies
1.3k
views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
23 months ago by Jalil Sharif ▴ 80
6
votes
12
replies
3.2k
views
6 follow
gtf2bed not converting to bed
bed gtf
updated 23 months ago by 9.1k • written 23 months ago by ▴ 80
0
votes
0
replies
3.2k
views
Comment: Comment: gtf2bed not converting to bed
23 months ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.1k
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
24 months ago by Jalil Sharif ▴ 80
3
votes
4
replies
1.1k
views
Ensembl equivalent of refseq transcript fasta
ensembl transcriptome refseq
24 months ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.1k
views
Comment: Comment: Ensembl equivalent of refseq transcript fasta
24 months ago by Jalil Sharif ▴ 80
0
votes
1
reply
1.3k
views
short read aligners 25-50bp BWA vs BWA-MEM vs Bowtie vs Bowtie2
alignment read short
updated 2.1 years ago by 7.1k • written 2.1 years ago by ▴ 80
0
votes
0
replies
927
views
Comment: Comment: differential gene expression pipelines rnaflow vs rnaseq
2.1 years ago by Jalil Sharif ▴ 80
0
votes
2
replies
927
views
differential gene expression pipelines rnaflow vs rnaseq
differential expression gene
2.1 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
483
views
bowtie2 code to bwa-mem2
bwa-mem2 bowtie2
2.1 years ago by Jalil Sharif ▴ 80
1
vote
1
reply
1.8k
views
Extracting Beta, SE and P-Value from GLM model
beta glm r
updated 2.6 years ago by 4.8k • written 2.6 years ago by ▴ 80
0
votes
1
reply
552
views
Annotation SNP's with their Gene names
Gene annotations
updated 2.7 years ago by 2.9k • written 2.7 years ago by ▴ 80
0
votes
0
replies
602
views
PLINK - PRS/GRS .fam file has fewer tokens
plink fam PRS
updated 23 months ago by 44k • written 2.9 years ago by ▴ 80
0
votes
0
replies
1.0k
views
Comment: Comment: How to find top-hit SNP from gwas.
3.0 years ago by Jalil Sharif ▴ 80
1
vote
3
replies
1.0k
views
How to find top-hit SNP from gwas.
SNP GWAS tophits
3.0 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
3.1k
views
Comment: Comment: Clumping error Plink
3.1 years ago by Jalil Sharif ▴ 80
0
votes
3
replies
3.1k
views
Clumping error Plink
clumping plink biobank uk
updated 3.1 years ago by ★ 4.8k • written 3.1 years ago by ▴ 80
0
votes
0
replies
1.1k
views
Comment: Comment: UK Biobank difference in number of patients diagnosed in field 41270 vs extracte
3.1 years ago by Jalil Sharif ▴ 80
0
votes
2
replies
1.1k
views
UK Biobank difference in number of patients diagnosed in field 41270 vs extracted phenotypes.
Field Diagnosis UK Biobank
3.1 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
1.4k
views
Comment: Comment: Averaging across multiple columns
3.2 years ago by Jalil Sharif ▴ 80
2
votes
1
reply
1.4k
views
Answer: Answer: Averaging across multiple columns
3.2 years ago by Jalil Sharif ▴ 80
4
votes
5
replies
1.4k
views
Averaging across multiple columns
awk bash column
3.2 years ago by Jalil Sharif ▴ 80
3
votes
0
replies
8.7k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
3.3 years ago by Jalil Sharif ▴ 80
4
votes
6
replies
8.7k
views
merging multiple .bed /.bgen files uk biobank using plink
plink uk biobank merge-list
3.3 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
8.7k
views
Answer: Answer: merging multiple .bed /.bgen files uk biobank using plink
3.3 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
8.7k
views
Comment: Comment: merging multiple .bed /.bgen files uk biobank using plink
3.3 years ago by Jalil Sharif ▴ 80
1
vote
15
replies
5.0k
views
PRS in UK Biobank - no covariate file and no phenotype file
UK Biobank PRS
3.4 years ago by Jalil Sharif ▴ 80
0
votes
0
replies
5.0k
views
Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
3.4 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
5.0k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
3.4 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
5.0k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
3.4 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
5.0k
views
Answer: Answer: PRS in UK Biobank - no covariate file and no phenotype file
3.4 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
5.0k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
3.4 years ago by Jalil Sharif ▴ 80
0
votes
1
reply
5.0k
views
Comment: Comment: PRS in UK Biobank - no covariate file and no phenotype file
3.4 years ago by Jalil Sharif ▴ 80
53 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6