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0
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Comment:
Comment: how to measure significance of improvement between two methods during modeling
12 months ago by
rheab1230
▴ 140
0
votes
3
replies
749
views
how to measure significance of improvement between two methods during modeling
spearman
correlation
updated 12 months ago by
Jean-Karim Heriche
27k • written 12 months ago by
rheab1230
▴ 140
0
votes
4
replies
1.1k
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
updated 14 months ago by
ATpoint
88k • written 14 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.1k
views
Comment:
Comment: how to find genes that are significantly expressed in brain cortex samples
14 months ago by
rheab1230
▴ 140
0
votes
0
replies
409
views
beta coefficient improves after doing mediation analysis
coefficient
mediation
beta
regression
15 months ago by
rheab1230
▴ 140
0
votes
0
replies
2.0k
views
Comment:
Comment: Manhattan plot for TWAS results
15 months ago by
rheab1230
▴ 140
5
votes
4
replies
2.0k
views
Manhattan plot for TWAS results
TWAS
GWAS
manhattan-plot
15 months ago by
rheab1230
▴ 140
0
votes
1
reply
719
views
Comment:
Comment: How to show that correlation from one method is more significant than other meth
16 months ago by
rheab1230
▴ 140
0
votes
3
replies
719
views
How to show that correlation from one method is more significant than other method?
p-value
model-performance
significance
correlation
updated 16 months ago by
Shred
★ 1.6k • written 16 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.3k
views
Comment:
Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
19 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.3k
views
Comment:
Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
20 months ago by
rheab1230
▴ 140
1
vote
5
replies
1.3k
views
how to convert beta effect size of SNP to a statistical value to be compared across tissues
beta-effect
statistics
SNP
multi-variate
updated 19 months ago by
LChart
5.0k • written 20 months ago by
rheab1230
▴ 140
0
votes
2
replies
885
views
how to evaluate SNPs that are regulating same gene expression across multiple tissues
snp
GTEx
updated 21 months ago by
LChart
5.0k • written 21 months ago by
rheab1230
▴ 140
0
votes
4
replies
1.6k
views
error while installing peertools
peertools
updated 22 months ago by
Mensur Dlakic
★ 29k • written 3.6 years ago by
rheab1230
▴ 140
0
votes
0
replies
521
views
snps being shared by gene in different tissues
mechanism
shared
colocalization
snp
tissues
23 months ago by
rheab1230
▴ 140
0
votes
0
replies
407
views
how to calculate predicted expression using weights from model file
predicted-expression
R
predixcan
updated 24 months ago by
Ram
45k • written 24 months ago by
rheab1230
▴ 140
0
votes
0
replies
711
views
How to testing of cv.glmnet model on the entire dataset rather than just training
cross-validation
testing
glmnet
model
updated 24 months ago by
Ram
45k • written 24 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.5k
views
Comment:
Comment: rank SNPs after elastic net modeling
24 months ago by
rheab1230
▴ 140
0
votes
1
reply
1.5k
views
Comment:
Comment: rank SNPs after elastic net modeling
24 months ago by
rheab1230
▴ 140
1
vote
5
replies
1.5k
views
rank SNPs after elastic net modeling
SNPs
R
elastic-net
modeling
updated 24 months ago by
Shred
★ 1.6k • written 24 months ago by
rheab1230
▴ 140
0
votes
0
replies
507
views
how to plot heatmap in r for all the gene across tissues to see distribution of snps
snp
R
heatmap
updated 24 months ago by
Ram
45k • written 24 months ago by
rheab1230
▴ 140
0
votes
0
replies
1.9k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
2.0 years ago by
rheab1230
▴ 140
0
votes
1
reply
1.9k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
2.0 years ago by
rheab1230
▴ 140
0
votes
1
reply
1.9k
views
Comment:
Comment: calculate p value and associated z score for snp-gene pair
2.0 years ago by
rheab1230
▴ 140
4
votes
6
replies
1.9k
views
calculate p value and associated z score for snp-gene pair
snp
association
gene
pvalue
2.0 years ago by
rheab1230
▴ 140
0
votes
0
replies
919
views
Comment:
Comment: how to look for interactions between different chromosomes
2.0 years ago by
rheab1230
▴ 140
1
vote
2
replies
919
views
how to look for interactions between different chromosomes
SNP
interactions
Gene
HiC
2.0 years ago by
rheab1230
▴ 140
0
votes
1
reply
1.6k
views
how to input bedpe file in IGV
IGV
interaction
input
bedpe
updated 2.1 years ago by
Pierre Lindenbaum
166k • written 2.1 years ago by
rheab1230
▴ 140
0
votes
1
reply
906
views
how to look at interacting SNP for a gene using Hic contact map
peak
interaction
contact-map
Hi-C
updated 2.1 years ago by
james.hawley
▴ 80 • written 2.1 years ago by
rheab1230
▴ 140
0
votes
0
replies
515
views
how to calculate minor allele frequency for each snp across samples
maf
snp
genotype
2.2 years ago by
rheab1230
▴ 140
0
votes
0
replies
947
views
Comment:
Comment: how to look at interaction between SNP and gene
2.2 years ago by
rheab1230
▴ 140
0
votes
0
replies
534
views
how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp
genes
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
rheab1230
▴ 140
0
votes
2
replies
947
views
how to look at interaction between SNP and gene
SNP
Gene
Hi-C
2.2 years ago by
rheab1230
▴ 140
0
votes
1
reply
707
views
how to import hdf5 Hi-C data into R using HiTC package
hdf5
importC
R
HiTC
updated 2.2 years ago by
rpolicastro
13k • written 2.2 years ago by
rheab1230
▴ 140
0
votes
0
replies
520
views
how to get genomic range for hi-c datasets in hdf5 file
R
hi-c
contact-map
genomic-ranges
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
rheab1230
▴ 140
0
votes
0
replies
503
views
how to interpret hi-c heatmap hdf5 file
heatmap
maps
hdf5
hi-c
2.2 years ago by
rheab1230
▴ 140
0
votes
0
replies
565
views
inquiry related to Hi-C data download
Hi-C
datasets
human
brain-cortex
interaction
matrix
2.2 years ago by
rheab1230
▴ 140
0
votes
0
replies
1.5k
views
Comment:
Comment: how to create interacting Hi-C peaks
2.2 years ago by
rheab1230
▴ 140
0
votes
0
replies
1.5k
views
Comment:
Comment: how to create interacting Hi-C peaks
2.2 years ago by
rheab1230
▴ 140
0
votes
4
replies
1.5k
views
how to create interacting Hi-C peaks
chromatin
interaction
gene
Hi-C
2.2 years ago by
rheab1230
▴ 140
0
votes
0
replies
602
views
How to find association between a gene-rsid and AD
association
Loci
LD
AD
2.3 years ago by
rheab1230
▴ 140
0
votes
0
replies
542
views
inquiry related to same SNP for a gene across for two tissues
snp
relation
tissue
genetics
gene
2.3 years ago by
rheab1230
▴ 140
0
votes
0
replies
422
views
chia-pet tutorial
snp
gene
chia-pet
2.3 years ago by
rheab1230
▴ 140
0
votes
0
replies
3.0k
views
Comment:
Comment: how to use make.names commnad in r while using rbind function
2.3 years ago by
rheab1230
▴ 140
3
votes
3
replies
3.0k
views
how to use make.names commnad in r while using rbind function
R
2.3 years ago by
rheab1230
▴ 140
1
vote
1
reply
759
views
error while submitting a Rscript job through slurm
slurm
R
updated 2.3 years ago by
Ram
45k • written 2.3 years ago by
rheab1230
▴ 140
1
vote
0
replies
1.2k
views
Comment:
Comment: installation of bioclite gives an error
2.4 years ago by
rheab1230
▴ 140
4
votes
2
replies
1.2k
views
installation of bioclite gives an error
R
bioclite
bioconductor
Biocmanager
updated 2.1 years ago by
Ram
45k • written 2.4 years ago by
rheab1230
▴ 140
0
votes
0
replies
923
views
Comment:
Comment: difference between chip-seq and association study
2.4 years ago by
rheab1230
▴ 140
2
votes
2
replies
923
views
difference between chip-seq and association study
association
chip-seq
TWAS
2.4 years ago by
rheab1230
▴ 140
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