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Comment: Comment: how to measure significance of improvement between two methods during modeling
6 months ago by rheab1230 ▴ 140
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3
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408
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how to measure significance of improvement between two methods during modeling
spearman correlation
updated 6 months ago by 27k • written 6 months ago by ▴ 140
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4
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868
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how to find genes that are significantly expressed in brain cortex samples
rna-seq gene-expression
updated 8 months ago by 86k • written 8 months ago by ▴ 140
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1
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868
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Comment: Comment: how to find genes that are significantly expressed in brain cortex samples
8 months ago by rheab1230 ▴ 140
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312
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beta coefficient improves after doing mediation analysis
coefficient mediation beta regression
9 months ago by rheab1230 ▴ 140
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0
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1.1k
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Comment: Comment: Manhattan plot for TWAS results
10 months ago by rheab1230 ▴ 140
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4
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1.1k
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Manhattan plot for TWAS results
TWAS GWAS manhattan-plot
10 months ago by rheab1230 ▴ 140
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483
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Comment: Comment: How to show that correlation from one method is more significant than other meth
10 months ago by rheab1230 ▴ 140
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3
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483
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How to show that correlation from one method is more significant than other method?
p-value model-performance significance correlation
updated 10 months ago by ★ 1.6k • written 10 months ago by ▴ 140
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1
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976
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Comment: Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
14 months ago by rheab1230 ▴ 140
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1
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976
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Comment: Comment: how to convert beta effect size of SNP to a statistical value to be compared acr
14 months ago by rheab1230 ▴ 140
1
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5
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976
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how to convert beta effect size of SNP to a statistical value to be compared across tissues
beta-effect statistics SNP multi-variate
updated 14 months ago by 4.7k • written 14 months ago by ▴ 140
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2
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685
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how to evaluate SNPs that are regulating same gene expression across multiple tissues
snp GTEx
updated 15 months ago by 4.7k • written 15 months ago by ▴ 140
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4
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1.3k
views
error while installing peertools
peertools
updated 16 months ago by ★ 28k • written 3.1 years ago by ▴ 140
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0
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441
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snps being shared by gene in different tissues
mechanism shared colocalization snp tissues
17 months ago by rheab1230 ▴ 140
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0
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352
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how to calculate predicted expression using weights from model file
predicted-expression R predixcan
updated 18 months ago by 44k • written 18 months ago by ▴ 140
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0
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592
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How to testing of cv.glmnet model on the entire dataset rather than just training
cross-validation testing glmnet model
updated 18 months ago by 44k • written 18 months ago by ▴ 140
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1
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1.1k
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Comment: Comment: rank SNPs after elastic net modeling
18 months ago by rheab1230 ▴ 140
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1
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1.1k
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Comment: Comment: rank SNPs after elastic net modeling
18 months ago by rheab1230 ▴ 140
1
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5
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1.1k
views
rank SNPs after elastic net modeling
SNPs R elastic-net modeling
updated 18 months ago by ★ 1.6k • written 18 months ago by ▴ 140
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0
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442
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how to plot heatmap in r for all the gene across tissues to see distribution of snps
snp R heatmap
updated 18 months ago by 44k • written 18 months ago by ▴ 140
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0
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1.4k
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Comment: Comment: calculate p value and associated z score for snp-gene pair
18 months ago by rheab1230 ▴ 140
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1
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1.4k
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Comment: Comment: calculate p value and associated z score for snp-gene pair
19 months ago by rheab1230 ▴ 140
0
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1
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1.4k
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Comment: Comment: calculate p value and associated z score for snp-gene pair
19 months ago by rheab1230 ▴ 140
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6
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1.4k
views
calculate p value and associated z score for snp-gene pair
snp association gene pvalue
18 months ago by rheab1230 ▴ 140
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0
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714
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Comment: Comment: how to look for interactions between different chromosomes
19 months ago by rheab1230 ▴ 140
1
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2
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714
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how to look for interactions between different chromosomes
SNP interactions Gene HiC
19 months ago by rheab1230 ▴ 140
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1
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1.3k
views
how to input bedpe file in IGV
IGV interaction input bedpe
updated 19 months ago by 164k • written 19 months ago by ▴ 140
0
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1
reply
743
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how to look at interacting SNP for a gene using Hic contact map
peak interaction contact-map Hi-C
updated 20 months ago by ▴ 80 • written 20 months ago by ▴ 140
0
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0
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396
views
how to calculate minor allele frequency for each snp across samples
maf snp genotype
20 months ago by rheab1230 ▴ 140
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0
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783
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Comment: Comment: how to look at interaction between SNP and gene
21 months ago by rheab1230 ▴ 140
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0
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422
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how to plot distribution of SNPs across a set of genes based on distance between snp and gene
snp genes
updated 21 months ago by 44k • written 21 months ago by ▴ 140
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2
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783
views
how to look at interaction between SNP and gene
SNP Gene Hi-C
21 months ago by rheab1230 ▴ 140
0
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1
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606
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how to import hdf5 Hi-C data into R using HiTC package
hdf5 importC R HiTC
updated 21 months ago by 13k • written 21 months ago by ▴ 140
0
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0
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412
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how to get genomic range for hi-c datasets in hdf5 file
R hi-c contact-map genomic-ranges
updated 21 months ago by 44k • written 21 months ago by ▴ 140
0
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0
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410
views
how to interpret hi-c heatmap hdf5 file
heatmap maps hdf5 hi-c
21 months ago by rheab1230 ▴ 140
0
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0
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439
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inquiry related to Hi-C data download
Hi-C datasets human brain-cortex interaction matrix
21 months ago by rheab1230 ▴ 140
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0
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1.2k
views
Comment: Comment: how to create interacting Hi-C peaks
21 months ago by rheab1230 ▴ 140
0
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0
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1.2k
views
Comment: Comment: how to create interacting Hi-C peaks
21 months ago by rheab1230 ▴ 140
0
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4
replies
1.2k
views
how to create interacting Hi-C peaks
chromatin interaction gene Hi-C
21 months ago by rheab1230 ▴ 140
0
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0
replies
515
views
How to find association between a gene-rsid and AD
association Loci LD AD
21 months ago by rheab1230 ▴ 140
0
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0
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447
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inquiry related to same SNP for a gene across for two tissues
snp relation tissue genetics gene
21 months ago by rheab1230 ▴ 140
0
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0
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378
views
chia-pet tutorial
snp gene chia-pet
21 months ago by rheab1230 ▴ 140
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0
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2.2k
views
Comment: Comment: how to use make.names commnad in r while using rbind function
21 months ago by rheab1230 ▴ 140
3
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3
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2.2k
views
how to use make.names commnad in r while using rbind function
R
21 months ago by rheab1230 ▴ 140
1
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1
reply
608
views
error while submitting a Rscript job through slurm
slurm R
updated 22 months ago by 44k • written 22 months ago by ▴ 140
1
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0
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940
views
Comment: Comment: installation of bioclite gives an error
22 months ago by rheab1230 ▴ 140
4
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2
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940
views
installation of bioclite gives an error
R bioclite bioconductor Biocmanager
updated 19 months ago by 44k • written 22 months ago by ▴ 140
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0
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729
views
Comment: Comment: difference between chip-seq and association study
22 months ago by rheab1230 ▴ 140
2
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2
replies
729
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difference between chip-seq and association study
association chip-seq TWAS
22 months ago by rheab1230 ▴ 140
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