Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
458
views
comparison of gene models across tissues
elastinet TWAS models association
23 months ago by rheab1230 ▴ 140
0
votes
1
reply
1.0k
views
Comment: Comment: gwas summary statistics
23 months ago by rheab1230 ▴ 140
0
votes
3
replies
1.0k
views
gwas summary statistics
AD gwas summary-statistics predixcan
updated 23 months ago by 22k • written 23 months ago by ▴ 140
0
votes
0
replies
705
views
Comment: Comment: genes associated with AD list
23 months ago by rheab1230 ▴ 140
3
votes
2
replies
705
views
genes associated with AD list
snp variants alzheimer association genes
23 months ago by rheab1230 ▴ 140
0
votes
1
reply
603
views
trans eqtl study for TWAS
twas eqtl GWAS bayesian
updated 21 months ago by ★ 3.0k • written 23 months ago by ▴ 140
5
votes
2
replies
1.2k
views
how to loop through various dataframes in R
dataframe R
updated 24 months ago by 12k • written 24 months ago by ▴ 140
0
votes
0
replies
711
views
Comment: Comment: Inquiry related to processing multiple db file simulataneously
2.0 years ago by rheab1230 ▴ 140
0
votes
2
replies
711
views
Inquiry related to processing multiple db file simulataneously
sql R
updated 21 months ago by 44k • written 2.1 years ago by ▴ 140
5
votes
11
replies
4.1k
views
plotting AF in vcf files
AF vcf plotting
updated 2.1 years ago by ▴ 290 • written 3.4 years ago by ▴ 140
5
votes
1
reply
810
views
Learning Linux advance commands
grep awk linux sed
updated 14 months ago by ▴ 60 • written 2.2 years ago by ▴ 140
0
votes
1
reply
1.0k
views
Enhancer region
Chip-seq enhancer
updated 2.2 years ago by ▴ 20 • written 3.7 years ago by ▴ 140
0
votes
0
replies
733
views
Comment: Comment: develop model file after segregating vcf data into different ethnicity subgroup
2.2 years ago by rheab1230 ▴ 140
0
votes
2
replies
733
views
develop model file after segregating vcf data into different ethnicity subgroup
model machine vcf learning ethnicity
2.2 years ago by rheab1230 ▴ 140
0
votes
0
replies
1.1k
views
Comment: Comment: inverse normal transformation for gtex data
2.2 years ago by rheab1230 ▴ 140
3
votes
3
replies
1.1k
views
inverse normal transformation for gtex data
INT normalization gtex R
updated 2.1 years ago by ▴ 250 • written 2.2 years ago by ▴ 140
0
votes
0
replies
444
views
different sample IDs between vcf and gtex gene count file
sample vcf IDs gene gtex count
2.2 years ago by rheab1230 ▴ 140
0
votes
0
replies
494
views
Comment: Comment: filtering samples before normalization step
2.2 years ago by rheab1230 ▴ 140
0
votes
1
reply
494
views
filtering samples before normalization step
TMM depth gtex normalization sequencing
2.2 years ago by rheab1230 ▴ 140
0
votes
0
replies
815
views
Comment: Comment: edgeR normalization
2.3 years ago by rheab1230 ▴ 140
0
votes
1
reply
815
views
edgeR normalization
TMM normalization edgeR read_counts
2.3 years ago by rheab1230 ▴ 140
0
votes
3
replies
1.5k
views
how to calculate %of missing genotype in vcf file
vcf imputation michigan genotype
updated 2.3 years ago by ★ 5.3k • written 2.3 years ago by ▴ 140
0
votes
1
reply
913
views
extract DS field from a genotype file
vcf bcftools genotype
updated 18 months ago by 44k • written 2.3 years ago by ▴ 140
0
votes
0
replies
1.6k
views
Comment: Comment: difference between different field info in vcf file format
2.3 years ago by rheab1230 ▴ 140
4
votes
3
replies
1.6k
views
difference between different field info in vcf file format
format GT vcf filr DS
2.3 years ago by rheab1230 ▴ 140
0
votes
0
replies
522
views
Inquiry related to inverse quantile normalization
gtex normalization qtl genecount
2.3 years ago by rheab1230 ▴ 140
0
votes
0
replies
450
views
inquiry related to gtex normalization
gene GTEX expression tissue normalization brain
2.4 years ago by rheab1230 ▴ 140
5
votes
1
reply
639
views
How can I download SNPs from HapMap European populations?
snp annotation gtex
updated 2.4 years ago by 2.9k • written 2.4 years ago by ▴ 140
0
votes
0
replies
486
views
inquiry related to gtex normalization
gtex normalization gene count
2.4 years ago by rheab1230 ▴ 140
0
votes
0
replies
1.2k
views
Comment: Comment: convert .bed format to .txt format
2.4 years ago by rheab1230 ▴ 140
3
votes
2
replies
1.2k
views
convert .bed format to .txt format
gene expression bed count
2.4 years ago by rheab1230 ▴ 140
0
votes
1
reply
1.2k
views
Comment: Comment: deseq2 normalization for Gtex datasets
2.4 years ago by rheab1230 ▴ 140
0
votes
1
reply
1.2k
views
Comment: Comment: deseq2 normalization for Gtex datasets
2.4 years ago by rheab1230 ▴ 140
2
votes
4
replies
1.2k
views
deseq2 normalization for Gtex datasets
gene GTEX expression deseq2 tissue normalization brain
updated 2.4 years ago by 4.7k • written 2.4 years ago by ▴ 140
0
votes
0
replies
424
views
GTEx ID between vcf and gene count file
gene GTEx vcf count ID
2.4 years ago by rheab1230 ▴ 140
0
votes
0
replies
380
views
How to get SNP annotation file for GTEx data
SNP GTEx annotation rsid
2.5 years ago by rheab1230 ▴ 140
0
votes
0
replies
366
views
peertool to generate covariates file give an error
SNP covariates peertool gene
2.6 years ago by rheab1230 ▴ 140
0
votes
1
reply
630
views
how to predict gene expression from genotype file using already developed elastic net model
gene expression snp vcf
updated 2.6 years ago by 164k • written 2.6 years ago by ▴ 140
0
votes
0
replies
1.8k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
2.6 years ago by rheab1230 ▴ 140
0
votes
1
reply
1.8k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
2.6 years ago by rheab1230 ▴ 140
1
vote
0
replies
1.8k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
2.6 years ago by rheab1230 ▴ 140
1
vote
1
reply
1.8k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
2.6 years ago by rheab1230 ▴ 140
5
votes
7
replies
1.8k
views
error while using cyvcf2 to parse the vcf file
cyvcf2 vcf htslib
updated 19 months ago by 44k • written 2.6 years ago by ▴ 140
0
votes
0
replies
2.0k
views
Comment: Comment: bcftools error
2.6 years ago by rheab1230 ▴ 140
1
vote
2
replies
2.0k
views
bcftools error
vcf bcftools genotype
updated 19 months ago by 44k • written 2.6 years ago by ▴ 140
1
vote
2
replies
1.2k
views
plotting venndiagram and find the overlap in R for rsid between model and vcf files.
rsid venndiagram overlap
updated 2.7 years ago by 5.0k • written 2.7 years ago by ▴ 140
0
votes
1
reply
890
views
Comment: Comment: filtering out rsid from vcf files.
2.8 years ago by rheab1230 ▴ 140
0
votes
2
replies
890
views
filtering out rsid from vcf files.
vcf genotype rsid gene
updated 2.8 years ago by 102k • written 2.8 years ago by ▴ 140
0
votes
0
replies
955
views
Comment: Comment: split gtex genotype file by chromosome number
2.9 years ago by rheab1230 ▴ 140
0
votes
1
reply
19k
views
Comment: Comment: Easy way to split VCF file by chromosome
updated 22 months ago by 44k • written 2.9 years ago by ▴ 140
235 results • Page 2 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6