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2
votes
2
replies
3.4k
views
Repeatmodeler Error (Eleredef)
error repeatmasker
updated 6.8 years ago by ▴ 130 • written 11.7 years ago by ▴ 200
0
votes
0
replies
2.7k
views
Comment: C: Repeatmodeler Error (Error Index Out Of Bounds!)
8.4 years ago by jomaco ▴ 200
0
votes
0
replies
2.6k
views
Ks calculation discrepancy (yn00 PAML, MEGA6 nei gojobori)
paml mega6 nei-gojobori yn00 ks
updated 20 months ago by 44k • written 8.4 years ago by ▴ 200
0
votes
1
reply
1.7k
views
Genome coverage with pool of individuals
genome coverage pool
8.4 years ago by jomaco ▴ 200
0
votes
0
replies
1.4k
views
Samtools genotype call for pool of progeny
SNP sequencing
8.5 years ago by jomaco ▴ 200
1
vote
3
replies
2.4k
views
Cuffdiff secondary alignments (lower counts?)
tophat cuffdiff unique secondary alignments
updated 23 months ago by 44k • written 9.7 years ago by ▴ 200
1
vote
3
replies
2.3k
views
Bwa: Should Sai/Sam Sequences Processed Match?
sam bwa
updated 8.7 years ago by 20 • written 11.8 years ago by ▴ 200
9
votes
7
replies
7.2k
views
7 follow
Which Genome Synteny Program?
genome
updated 2.3 years ago by 44k • written 11.3 years ago by ▴ 200
1
vote
1
reply
1.9k
views
Higher coverage when using genomic sequencing reads from a pool of individuals
pool genomic dna individual
9.0 years ago by jomaco ▴ 200
0
votes
0
replies
5.7k
views
Answer: A: How to align a protein set to a genome?
9.0 years ago by jomaco ▴ 200
0
votes
1
reply
1.7k
views
Statistical method of deducing the probability of a ratio being 1:2 for pairs of numbers (read depth) in a set
ratio significance sequencing-depth
updated 2.4 years ago by 44k • written 9.1 years ago by ▴ 200
0
votes
2
replies
2.4k
views
Cufflinks - novel genes when using GFF file
RNA-Seq novel-genes Cufflinks
updated 2.3 years ago by 44k • written 9.2 years ago by ▴ 200
2
votes
2
replies
4.0k
views
Blast2GO (csv output)
blast2go csv ahrd
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 200
0
votes
0
replies
2.4k
views
Comment: Comment: Cuffdiff secondary alignments (lower counts?)
updated 23 months ago by 44k • written 9.6 years ago by ▴ 200
0
votes
1
reply
3.2k
views
Comment: C: How do denovo genome/transcriptome assemblers treat ambiguous bases?
9.6 years ago by jomaco ▴ 200
3
votes
11
replies
8.0k
views
K-means for non-spherical (non-globular) clusters
k-means spherical clusters
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 200
0
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1
reply
8.0k
views
Comment: C: K-means for non-spherical (non-globular) clusters
9.7 years ago by jomaco ▴ 200
0
votes
0
replies
8.0k
views
Comment: C: K-means for non-spherical (non-globular) clusters
9.7 years ago by jomaco ▴ 200
0
votes
1
reply
8.0k
views
Comment: C: K-means for non-spherical (non-globular) clusters
9.7 years ago by jomaco ▴ 200
0
votes
1
reply
8.0k
views
Comment: Comment: K-means for non-spherical (non-globular) clusters
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 200
0
votes
1
reply
2.7k
views
Zero expression Cuffdiff - conversative cut-off
Cuffdiff expression cut-off
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 200
1
vote
1
reply
2.1k
views
BEAST - Multiple representative sequences
multiple beast mads-box calibrations divergence
updated 2.7 years ago by 44k • written 10.6 years ago by ▴ 200
2
votes
3
replies
4.0k
views
GO term enrichment
GO-term gene-ontology enrichment GO
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 200
0
votes
1
reply
4.0k
views
Comment: C: GO term enrichment
9.9 years ago by jomaco ▴ 200
0
votes
1
reply
2.6k
views
Comment: C: AUGUSTUS principal isoform
9.9 years ago by jomaco ▴ 200
3
votes
1
reply
2.2k
views
Syntenic relationships between fragmented genomes
synteny
updated 2.9 years ago by 44k • written 10.1 years ago by ▴ 200
1
vote
3
replies
2.6k
views
AUGUSTUS principal isoform
isoform augustus principal-isoform
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 200
0
votes
0
replies
2.3k
views
Answer: Answer: Problem With Gene Product Name Generator (Ahrd)?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 200
0
votes
3
replies
2.9k
views
Blastall or blast+ (conversion tool?)
blastall ahrd blast-plus
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 200
0
votes
0
replies
2.9k
views
Comment: Comment: Blastall or blast+ (conversion tool?)
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 200
0
votes
0
replies
2.5k
views
Comment: Comment: AHRD functional annotation program (error)
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 200
0
votes
1
reply
2.5k
views
AHRD functional annotation program (error)
gene ahrd annotation
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 200
7
votes
5
replies
2.9k
views
Deseq - Should I Include Only The Samples Being Compared?
deseq rna-seq
updated 23 months ago by 44k • written 11.3 years ago by ▴ 200
0
votes
0
replies
2.3k
views
Comment: C: Problem With Gene Product Name Generator (Ahrd)?
10.1 years ago by jomaco ▴ 200
0
votes
0
replies
5.5k
views
Comment: C: How does the calculated inner-distance between reads change after trimming (in r
10.2 years ago by jomaco ▴ 200
2
votes
5
replies
5.5k
views
How does the calculated inner-distance between reads change after trimming (in relation to insert size)
trimming insert-length paired-end
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 200
0
votes
0
replies
5.5k
views
Comment: C: How does the calculated inner-distance between reads change after trimming (in r
10.2 years ago by jomaco ▴ 200
0
votes
0
replies
4.5k
views
Comment: C: Exonerate ** FATAL ERROR **: Unrecognised symbol 'J' (ascii:74)
10.5 years ago by jomaco ▴ 200
0
votes
1
reply
4.5k
views
Comment: C: Exonerate ** FATAL ERROR **: Unrecognised symbol 'J' (ascii:74)
10.5 years ago by jomaco ▴ 200
3
votes
4
replies
4.5k
views
Exonerate ** FATAL ERROR **: Unrecognised symbol 'J' (ascii:74)
exonerate fatal-error character ascii-74
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 200
1
vote
2
replies
2.7k
views
Exonerate Affine:Overlap Alternative
overlap
updated 10.7 years ago by 55k • written 10.7 years ago by ▴ 200
0
votes
1
reply
5.4k
views
Comment: C: Why Do I Get The Exonerate Error: Cannot Perform Heuristic Alignment Using Non-L
10.7 years ago by jomaco ▴ 200
0
votes
0
replies
3.9k
views
Genemark-E Gff3 Incorrect Format (Conversion Tool Available?)
gff3 format
10.9 years ago by jomaco ▴ 200
1
vote
1
reply
2.9k
views
Comment: C: Deseq - Should I Include Only The Samples Being Compared?
11.3 years ago by jomaco ▴ 200
0
votes
0
replies
2.4k
views
Quantifying The Area Under A K-Mer Frequency Distribution Curve To Estimate Heterozygosity
11.3 years ago by jomaco ▴ 200
5
votes
1
reply
10k
views
Deseq2 Pairwise Comparison Between Conditions
deseq differential expression
updated 11.3 years ago by 105k • written 11.3 years ago by ▴ 200
1
vote
1
reply
4.1k
views
Answer: A: Large Scale Protein Alignment
11.4 years ago by jomaco ▴ 200
0
votes
0
replies
2.2k
views
Should I Be Concerned About The Discrepancy Between The Results Produced By Repeatmodeler And Repeatscout
repeats consensus
updated 11.4 years ago by 102k • written 11.4 years ago by ▴ 200
1
vote
1
reply
2.2k
views
Long Runs Of A'S, G'S, C'S Or T'S In A Scaffolded Assembly (Abyss-1.3.4/Soapdenovo2)
scaffolding
updated 11.5 years ago by ★ 1.5k • written 11.6 years ago by ▴ 200
0
votes
2
replies
2.7k
views
Repeatmodeler Error (Error Index Out Of Bounds!)
repeatmasker error index
11.6 years ago by jomaco ▴ 200
54 results • Page 1 of 2
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