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6
votes
1
reply
2.2k
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Batch effect correction methods (Seurat v3, Harmony, fastMNN, Liger)
integration Batch seurat fastMNN Harmony
21 months ago by re_raz ▴ 70
6
votes
4
replies
2.2k
views
Single cell RNA-seq analysis
RNA-Seq
updated 3.0 years ago by ▴ 50 • written 4.4 years ago by ▴ 70
0
votes
0
replies
8.0k
views
Comment: Comment: The difference between merge and integration with Seurat objects
3.1 years ago by re_raz ▴ 70
7
votes
2
replies
8.0k
views
The difference between merge and integration with Seurat objects
integration merge Seurat
3.1 years ago by re_raz ▴ 70
0
votes
0
replies
982
views
Comment: Comment: What is the difference between filtering cells before creating Seurat object and
3.2 years ago by re_raz ▴ 70
0
votes
2
replies
982
views
What is the difference between filtering cells before creating Seurat object and after that?
Seurat filter cells
3.2 years ago by re_raz ▴ 70
0
votes
0
replies
20k
views
Comment: C: Exporting Raw counts into .csv file from seurat object
3.8 years ago by re_raz ▴ 70
0
votes
0
replies
15k
views
Comment: C: different between SCTransform and NormalizeData
4.3 years ago by re_raz ▴ 70
0
votes
1
reply
15k
views
Comment: C: different between SCTransform and NormalizeData
4.3 years ago by re_raz ▴ 70
5
votes
4
replies
15k
views
different between SCTransform and NormalizeData
R scRNA-seq Normalization SCTransform
4.3 years ago by re_raz ▴ 70
0
votes
1
reply
2.2k
views
Answer: A: single cell RNA analysis
updated 4.3 years ago by 44k • written 4.3 years ago by ▴ 70
0
votes
3
replies
2.2k
views
single cell RNA analysis
scrna-seq Seurat SCTransform memory
4.3 years ago by re_raz ▴ 70
0
votes
0
replies
7.0k
views
Comment: C: Analysis of single-cell RNA-seq data
4.3 years ago by re_raz ▴ 70
0
votes
0
replies
3.1k
views
Comment: C: reached iteration limit in SCTransform
4.3 years ago by re_raz ▴ 70
0
votes
1
reply
3.1k
views
Comment: C: reached iteration limit in SCTransform
4.4 years ago by re_raz ▴ 70
0
votes
0
replies
3.1k
views
Comment: C: reached iteration limit in SCTransform
4.4 years ago by re_raz ▴ 70
0
votes
1
reply
3.1k
views
Comment: C: reached iteration limit in SCTransform
4.4 years ago by re_raz ▴ 70
1
vote
7
replies
3.1k
views
reached iteration limit in SCTransform
SCTransform RNA-Seq seurat
updated 4.4 years ago by 147k • written 4.4 years ago by ▴ 70
0
votes
1
reply
1.7k
views
Comment: C: Gene expression from cell counts matrix
4.4 years ago by re_raz ▴ 70
4
votes
6
replies
1.7k
views
Gene expression from cell counts matrix
RNA-Seq gene expression
updated 4.4 years ago by 147k • written 4.4 years ago by ▴ 70
0
votes
1
reply
2.2k
views
Comment: C: Single cell RNA-seq analysis
4.4 years ago by re_raz ▴ 70
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