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0
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3
replies
727
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Getting an Expression Matrix from GDC Manifest File
RNAseq
updated 4 months ago by ★ 1.3k • written 5 months ago by ▴ 110
0
votes
1
reply
727
views
Comment: Comment: Getting an Expression Matrix from GDC Manifest File
5 months ago by cthangav ▴ 110
0
votes
0
replies
650
views
Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
5 months ago by cthangav ▴ 110
0
votes
1
reply
650
views
Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
5 months ago by cthangav ▴ 110
2
votes
4
replies
650
views
NCI Genomic Data Commons gdc-rnaseq-tool
RNA-seq Genomic-Data-Commons
5 months ago by cthangav ▴ 110
2
votes
1
reply
361
views
Conda Environment Issue
conda python yaml environments dependencies
updated 6 months ago by ▴ 30 • written 6 months ago by ▴ 110
0
votes
1
reply
2.2k
views
Comment: Comment: Create Conda Environment with YAML File
13 months ago by cthangav ▴ 110
1
vote
2
replies
2.2k
views
Comment: Comment: Create Conda Environment with YAML File
13 months ago by cthangav ▴ 110
7
votes
8
replies
2.2k
views
Create Conda Environment with YAML File
Python
updated 13 months ago by ★ 2.9k • written 13 months ago by ▴ 110
0
votes
0
replies
3.3k
views
Comment: Comment: How to overlay tracks in IGV?
20 months ago by cthangav ▴ 110
0
votes
0
replies
9.1k
views
Comment: Comment: Get TPM from RNA counts and gene length?
20 months ago by cthangav ▴ 110
0
votes
1
reply
3.3k
views
Comment: Comment: How to overlay tracks in IGV?
20 months ago by cthangav ▴ 110
2
votes
8
replies
3.3k
views
How to overlay tracks in IGV?
R IGV
20 months ago by cthangav ▴ 110
0
votes
1
reply
3.3k
views
Comment: Comment: How to overlay tracks in IGV?
21 months ago by cthangav ▴ 110
0
votes
1
reply
3.3k
views
Comment: Comment: How to overlay tracks in IGV?
21 months ago by cthangav ▴ 110
0
votes
0
replies
521
views
How to make Cicero Spider Plot
R Cicero IGV
21 months ago by cthangav ▴ 110
19
votes
4
replies
11k
views
Convert Human to Mouse Symbols
biomart R gene-symbols
updated 22 months ago by ★ 1.7k • written 22 months ago by ▴ 110
0
votes
0
replies
11k
views
Comment: Comment: Convert Human to Mouse Symbols
22 months ago by cthangav ▴ 110
0
votes
1
reply
1.0k
views
Putting Multiple ANOVA P-Values on Violin Plot
violin R ANOVA
updated 22 months ago by 10k • written 22 months ago by ▴ 110
0
votes
1
reply
777
views
Heatmap / Gene List Similarity
R
updated 22 months ago by ▴ 260 • written 22 months ago by ▴ 110
2
votes
1
reply
800
views
Filtering content in heatmap to highest values
R heatmap ggplot2
23 months ago by cthangav ▴ 110
5
votes
2
replies
880
views
Graphing Average Expression of Group of Genes
Boxplot R
updated 23 months ago by ★ 1.6k • written 23 months ago by ▴ 110
1
vote
2
replies
945
views
Identifying/Annotating Enhancers
bedtools R ENCODE
updated 22 months ago by 45k • written 23 months ago by ▴ 110
2
votes
1
reply
892
views
Pivot Table Help: A 'VALUE' Filters object has matched 10 row(s). Should have matched at most one row
R Pivottabler
updated 23 months ago by 12k • written 23 months ago by ▴ 110
3
votes
1
reply
988
views
How to Merge RNA Replicates
EdgeR FPKM RNA counts
updated 2.1 years ago by ★ 7.9k • written 2.1 years ago by ▴ 110
6
votes
3
replies
1.6k
views
How to make line graph with circles in R
R
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 110
0
votes
0
replies
9.1k
views
Comment: Comment: Get TPM from RNA counts and gene length?
2.2 years ago by cthangav ▴ 110
0
votes
2
replies
9.1k
views
Comment: Comment: Get TPM from RNA counts and gene length?
2.2 years ago by cthangav ▴ 110
16
votes
14
replies
9.1k
views
6 follow
Get TPM from RNA counts and gene length?
EdgeR RNA counts TPM
20 months ago by cthangav ▴ 110
2
votes
1
reply
1.1k
views
Get GO Term Size from GO ID
GO-term R
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 110
2
votes
2
replies
879
views
Genes With List of Go terms
go-terms GO
updated 21 months ago by 45k • written 2.3 years ago by ▴ 110
0
votes
0
replies
6.4k
views
Comment: Comment: Is the MACS pileup output normalized
2.3 years ago by cthangav ▴ 110
0
votes
0
replies
948
views
Comment: Comment: Left Join Issue in R
2.4 years ago by cthangav ▴ 110
0
votes
1
reply
948
views
Comment: Comment: Left Join Issue in R
2.4 years ago by cthangav ▴ 110
2
votes
3
replies
948
views
Left Join Issue in R
R
2.4 years ago by cthangav ▴ 110
2
votes
1
reply
781
views
Run MACS2 on merged BAM file Error
ATAC-seq
updated 2.4 years ago by 87k • written 2.4 years ago by ▴ 110
0
votes
0
replies
568
views
TxImport for Transcript to Gene Level Conversion of RNA files
tximport R RNA
3.0 years ago by cthangav ▴ 110
1
vote
2
replies
1.6k
views
How to deal with multiple transcripts of the same gene?
biology RNA-seq splicing transcripts RNA. genes
updated 3.2 years ago by 87k • written 3.2 years ago by ▴ 110
0
votes
0
replies
1.6k
views
Comment: Comment: How to deal with multiple transcripts of the same gene?
3.2 years ago by cthangav ▴ 110
0
votes
0
replies
851
views
Do you remove blacklisted regions before or after calling peaks?
ATAC-seq
3.5 years ago by cthangav ▴ 110
3
votes
2
replies
1.1k
views
Batch File For Loop Help
syntax
updated 3.6 years ago by 21k • written 3.6 years ago by ▴ 110
0
votes
0
replies
827
views
Feature selection
Feature Selection R
updated 3.6 years ago by 87k • written 3.6 years ago by ▴ 110
0
votes
0
replies
789
views
How to get Read Counts from MACS2 output files?
ATAC-seq pileup narrowpeak readcounts MACS2
3.6 years ago by cthangav ▴ 110
0
votes
0
replies
1.9k
views
Comment: Comment: Looking up Gene IDs in R
3.7 years ago by cthangav ▴ 110
0
votes
1
reply
1.9k
views
Comment: Comment: Looking up Gene IDs in R
3.7 years ago by cthangav ▴ 110
0
votes
1
reply
1.9k
views
Comment: Comment: Looking up Gene IDs in R
3.7 years ago by cthangav ▴ 110
5
votes
6
replies
1.9k
views
Looking up Gene IDs in R
R
3.7 years ago by cthangav ▴ 110
0
votes
0
replies
5.2k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
3.8 years ago by cthangav ▴ 110
0
votes
1
reply
5.2k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
3.8 years ago by cthangav ▴ 110
1
vote
5
replies
5.2k
views
Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY rows, data has 0
R
updated 3.8 years ago by 45k • written 3.8 years ago by ▴ 110
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