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Getting an Expression Matrix from GDC Manifest File
RNAseq
updated 2 days ago by ★ 1.2k • written 5 days ago by ▴ 110
0
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0
replies
411
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
7 days ago by cthangav ▴ 110
0
votes
1
reply
411
views
Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
14 days ago by cthangav ▴ 110
2
votes
4
replies
411
views
NCI Genomic Data Commons gdc-rnaseq-tool
RNA-seq Genomic-Data-Commons
7 days ago by cthangav ▴ 110
2
votes
1
reply
221
views
Conda Environment Issue
conda python yaml environments dependencies
updated 5 weeks ago by ▴ 30 • written 5 weeks ago by ▴ 110
0
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1
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1.2k
views
Comment: Comment: Create Conda Environment with YAML File
8 months ago by cthangav ▴ 110
1
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2
replies
1.2k
views
Comment: Comment: Create Conda Environment with YAML File
8 months ago by cthangav ▴ 110
7
votes
8
replies
1.2k
views
Create Conda Environment with YAML File
Python
updated 8 months ago by ★ 2.5k • written 8 months ago by ▴ 110
0
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0
replies
2.5k
views
Comment: Comment: How to overlay tracks in IGV?
15 months ago by cthangav ▴ 110
0
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0
replies
7.2k
views
Comment: Comment: Get TPM from RNA counts and gene length?
15 months ago by cthangav ▴ 110
0
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1
reply
2.5k
views
Comment: Comment: How to overlay tracks in IGV?
15 months ago by cthangav ▴ 110
2
votes
8
replies
2.5k
views
How to overlay tracks in IGV?
R IGV
15 months ago by cthangav ▴ 110
0
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1
reply
2.5k
views
Comment: Comment: How to overlay tracks in IGV?
16 months ago by cthangav ▴ 110
0
votes
1
reply
2.5k
views
Comment: Comment: How to overlay tracks in IGV?
16 months ago by cthangav ▴ 110
0
votes
0
replies
454
views
How to make Cicero Spider Plot
R Cicero IGV
16 months ago by cthangav ▴ 110
19
votes
4
replies
8.8k
views
Convert Human to Mouse Symbols
biomart R gene-symbols
updated 17 months ago by ★ 1.7k • written 17 months ago by ▴ 110
0
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0
replies
8.8k
views
Comment: Comment: Convert Human to Mouse Symbols
17 months ago by cthangav ▴ 110
0
votes
1
reply
752
views
Putting Multiple ANOVA P-Values on Violin Plot
violin R ANOVA
updated 17 months ago by 10k • written 17 months ago by ▴ 110
0
votes
1
reply
673
views
Heatmap / Gene List Similarity
R
updated 17 months ago by ▴ 260 • written 17 months ago by ▴ 110
2
votes
1
reply
636
views
Filtering content in heatmap to highest values
R heatmap ggplot2
17 months ago by cthangav ▴ 110
5
votes
2
replies
693
views
Graphing Average Expression of Group of Genes
Boxplot R
updated 18 months ago by ★ 1.5k • written 18 months ago by ▴ 110
1
vote
2
replies
784
views
Identifying/Annotating Enhancers
bedtools R ENCODE
updated 17 months ago by 44k • written 18 months ago by ▴ 110
2
votes
1
reply
701
views
Pivot Table Help: A 'VALUE' Filters object has matched 10 row(s). Should have matched at most one row
R Pivottabler
updated 18 months ago by 12k • written 18 months ago by ▴ 110
3
votes
1
reply
801
views
How to Merge RNA Replicates
EdgeR FPKM RNA counts
updated 20 months ago by ★ 7.7k • written 20 months ago by ▴ 110
6
votes
3
replies
1.2k
views
How to make line graph with circles in R
R
updated 20 months ago by ★ 2.0k • written 20 months ago by ▴ 110
0
votes
0
replies
7.2k
views
Comment: Comment: Get TPM from RNA counts and gene length?
21 months ago by cthangav ▴ 110
0
votes
2
replies
7.2k
views
Comment: Comment: Get TPM from RNA counts and gene length?
21 months ago by cthangav ▴ 110
16
votes
14
replies
7.2k
views
6 follow
Get TPM from RNA counts and gene length?
EdgeR RNA counts TPM
15 months ago by cthangav ▴ 110
2
votes
1
reply
874
views
Get GO Term Size from GO ID
GO-term R
updated 22 months ago by 44k • written 22 months ago by ▴ 110
2
votes
2
replies
751
views
Genes With List of Go terms
go-terms GO
updated 16 months ago by 44k • written 22 months ago by ▴ 110
0
votes
0
replies
6.1k
views
Comment: Comment: Is the MACS pileup output normalized
23 months ago by cthangav ▴ 110
0
votes
0
replies
845
views
Comment: Comment: Left Join Issue in R
23 months ago by cthangav ▴ 110
0
votes
1
reply
845
views
Comment: Comment: Left Join Issue in R
24 months ago by cthangav ▴ 110
2
votes
3
replies
845
views
Left Join Issue in R
R
23 months ago by cthangav ▴ 110
2
votes
1
reply
671
views
Run MACS2 on merged BAM file Error
ATAC-seq
updated 2.0 years ago by 85k • written 2.0 years ago by ▴ 110
0
votes
0
replies
510
views
TxImport for Transcript to Gene Level Conversion of RNA files
tximport R RNA
2.6 years ago by cthangav ▴ 110
1
vote
2
replies
1.4k
views
How to deal with multiple transcripts of the same gene?
biology RNA-seq splicing transcripts RNA. genes
updated 2.7 years ago by 85k • written 2.7 years ago by ▴ 110
0
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0
replies
1.4k
views
Comment: Comment: How to deal with multiple transcripts of the same gene?
2.7 years ago by cthangav ▴ 110
0
votes
0
replies
769
views
Do you remove blacklisted regions before or after calling peaks?
ATAC-seq
3.1 years ago by cthangav ▴ 110
3
votes
2
replies
972
views
Batch File For Loop Help
syntax
updated 3.2 years ago by 21k • written 3.2 years ago by ▴ 110
0
votes
0
replies
730
views
Feature selection
Feature Selection R
updated 3.2 years ago by 85k • written 3.2 years ago by ▴ 110
0
votes
0
replies
707
views
How to get Read Counts from MACS2 output files?
ATAC-seq pileup narrowpeak readcounts MACS2
3.2 years ago by cthangav ▴ 110
0
votes
0
replies
1.7k
views
Comment: Comment: Looking up Gene IDs in R
3.2 years ago by cthangav ▴ 110
0
votes
1
reply
1.7k
views
Comment: Comment: Looking up Gene IDs in R
3.3 years ago by cthangav ▴ 110
0
votes
1
reply
1.7k
views
Comment: Comment: Looking up Gene IDs in R
3.3 years ago by cthangav ▴ 110
5
votes
6
replies
1.7k
views
Looking up Gene IDs in R
R
3.2 years ago by cthangav ▴ 110
0
votes
0
replies
4.8k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
3.4 years ago by cthangav ▴ 110
0
votes
1
reply
4.8k
views
Comment: Comment: Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY
3.4 years ago by cthangav ▴ 110
1
vote
5
replies
4.8k
views
Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY rows, data has 0
R
updated 3.4 years ago by 44k • written 3.4 years ago by ▴ 110
0
votes
0
replies
1.3k
views
Comment: Comment: Is the pileup value the ATAC-seq counts?
3.4 years ago by cthangav ▴ 110
62 results • Page 1 of 2
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