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186
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Fast querying of variant metrics with database
python database
updated 5 weeks ago by 165k • written 5 weeks ago by ▴ 470
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395
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Answer: Answer: Snakemake version 8.27.1 on LSF cluster
7 weeks ago by DBScan ▴ 470
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502
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Comment: Comment: Giraffe DeepVariant workflow
4 months ago by DBScan ▴ 470
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2
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502
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Giraffe DeepVariant workflow
deepvariant vg giraffe
updated 4 months ago by 102k • written 4 months ago by ▴ 470
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595
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Comment: Comment: bcftools/vt split multiallelics - split GT along with splitting multi-allelics
6 months ago by DBScan ▴ 470
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1.8k
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Answer: Answer: RNA-Seq mutation calling without germline data
6 months ago by DBScan ▴ 470
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557
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Answer: Answer: Removing conda environment created in a snakemake workflow
6 months ago by DBScan ▴ 470
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0
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792
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Answer: Answer: Ancestry estimation using 1000 genomes as reference
7 months ago by DBScan ▴ 470
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933
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Answer: Answer: are illumina fastq files typically split by lane?
7 months ago by DBScan ▴ 470
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1
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678
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Comment: Comment: How to fix this error while performing QC in PLINK "Warning: 228 het. haploid g
7 months ago by DBScan ▴ 470
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1
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855
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Answer: Answer: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
8 months ago by DBScan ▴ 470
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557
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Answer: Answer: batchtools_slurm job setting with seurat
8 months ago by DBScan ▴ 470
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0
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1.4k
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Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
8 months ago by DBScan ▴ 470
2
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3
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652
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Snakemake rule to copy files
snakemake
updated 8 months ago by ▴ 530 • written 8 months ago by ▴ 470
2
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0
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652
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Answer: Answer: Snakemake rule to copy files
8 months ago by DBScan ▴ 470
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1
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554
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Answer: Answer: Add tags/ header lines to a vcf file
10 months ago by DBScan ▴ 470
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1
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1.2k
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
10 months ago by DBScan ▴ 470
2
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1
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1.2k
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
10 months ago by DBScan ▴ 470
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1
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1.1k
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Comment: Comment: How to get the ratio of allele counts from GATK derived VCF file?
10 months ago by DBScan ▴ 470
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524
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Comment: Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
10 months ago by DBScan ▴ 470
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1.7k
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Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
11 months ago by DBScan ▴ 470
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0
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1.6k
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Comment: Comment: t-test in two groups, multiple rows
12 months ago by DBScan ▴ 470
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0
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1.7k
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Answer: Answer: gnomAD4.0 Hail Table Downloading
12 months ago by DBScan ▴ 470
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0
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926
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Comment: Comment: HLA genotyping of whole genome sequencing data
13 months ago by DBScan ▴ 470
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1
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3.4k
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Answer: Answer: Nextflow and self-made pipelines opinion
13 months ago by DBScan ▴ 470
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0
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906
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
13 months ago by DBScan ▴ 470
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1
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906
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
13 months ago by DBScan ▴ 470
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1
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2.7k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
13 months ago by DBScan ▴ 470
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1
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2.7k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
13 months ago by DBScan ▴ 470
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1
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1.1k
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Answer: Answer: how to extract variants from the vcf.gz files linked below?
13 months ago by DBScan ▴ 470
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1
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521
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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
13 months ago by DBScan ▴ 470
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0
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1.1k
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
13 months ago by DBScan ▴ 470
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1
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1.1k
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
13 months ago by DBScan ▴ 470
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1
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1.1k
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
13 months ago by DBScan ▴ 470
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0
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1.7k
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Comment: Comment: difference betwween hail and plink
14 months ago by DBScan ▴ 470
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1
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910
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Answer: Answer: What is the best GWAS tool to use for a very large cohort data (UK Biobank data)
14 months ago by DBScan ▴ 470
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1
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1.4k
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Comment: Comment: PCA plot interpretation (single population)
14 months ago by DBScan ▴ 470
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1
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1.4k
views
Answer: Answer: fill-from-fasta doesnt fill missing values in REF
14 months ago by DBScan ▴ 470
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0
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1.2k
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
14 months ago by DBScan ▴ 470
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1
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1.0k
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Answer: Answer: Suggestions for a simpler solution for collecting snakemake rule output in a tex
14 months ago by DBScan ▴ 470
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0
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1.6k
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Comment: Comment: Problem with DRAGEN RNAseq hashtable directory
14 months ago by DBScan ▴ 470
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2
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1.6k
views
Answer: Answer: Problem with DRAGEN RNAseq hashtable directory
14 months ago by DBScan ▴ 470
1
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0
replies
694
views
Answer: Answer: how to merge two files without duplicating same column
14 months ago by DBScan ▴ 470
1
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1
reply
1.4k
views
Comment: Comment: GIAB Benchmarking
14 months ago by DBScan ▴ 470
0
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1
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992
views
Comment: Comment: Calculating number of SNPs in linkage disequilibrium at different thresholds fro
15 months ago by DBScan ▴ 470
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0
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1000
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Comment: Comment: GATK version check failed
15 months ago by DBScan ▴ 470
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0
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2.7k
views
Comment: Comment: Problem in installing 'magick' R package
16 months ago by DBScan ▴ 470
2
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1
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1.4k
views
Answer: Answer: Snakemake alignment script
18 months ago by DBScan ▴ 470
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0
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1.1k
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Comment: Comment: Saving the output of LD pruning from SNPRelate package as a new GDS file
18 months ago by DBScan ▴ 470
0
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0
replies
905
views
Answer: Answer: VCF QUAL field for multiple samples
18 months ago by DBScan ▴ 470
91 results • Page 1 of 2
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