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Comment: Comment: Giraffe DeepVariant workflow
6 days ago by DBScan ▴ 450
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244
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Giraffe DeepVariant workflow
deepvariant vg giraffe
updated 6 days ago by 102k • written 6 days ago by ▴ 450
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378
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Comment: Comment: bcftools/vt split multiallelics - split GT along with splitting multi-allelics
7 weeks ago by DBScan ▴ 450
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1.1k
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Answer: Answer: RNA-Seq mutation calling without germline data
8 weeks ago by DBScan ▴ 450
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294
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Answer: Answer: Removing conda environment created in a snakemake workflow
8 weeks ago by DBScan ▴ 450
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464
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Answer: Answer: Ancestry estimation using 1000 genomes as reference
12 weeks ago by DBScan ▴ 450
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547
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Answer: Answer: are illumina fastq files typically split by lane?
3 months ago by DBScan ▴ 450
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410
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Comment: Comment: How to fix this error while performing QC in PLINK "Warning: 228 het. haploid g
3 months ago by DBScan ▴ 450
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1
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528
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Answer: Answer: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
4 months ago by DBScan ▴ 450
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380
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Answer: Answer: batchtools_slurm job setting with seurat
4 months ago by DBScan ▴ 450
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888
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Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
4 months ago by DBScan ▴ 450
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3
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462
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Snakemake rule to copy files
snakemake
updated 4 months ago by ▴ 520 • written 4 months ago by ▴ 450
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462
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Answer: Answer: Snakemake rule to copy files
4 months ago by DBScan ▴ 450
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358
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Answer: Answer: Add tags/ header lines to a vcf file
5 months ago by DBScan ▴ 450
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1
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739
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
6 months ago by DBScan ▴ 450
2
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1
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739
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
6 months ago by DBScan ▴ 450
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1
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769
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Comment: Comment: How to get the ratio of allele counts from GATK derived VCF file?
6 months ago by DBScan ▴ 450
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352
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Comment: Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
6 months ago by DBScan ▴ 450
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1.2k
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Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
7 months ago by DBScan ▴ 450
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1.2k
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Comment: Comment: t-test in two groups, multiple rows
8 months ago by DBScan ▴ 450
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1.3k
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Answer: Answer: gnomAD4.0 Hail Table Downloading
8 months ago by DBScan ▴ 450
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0
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713
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Comment: Comment: HLA genotyping of whole genome sequencing data
9 months ago by DBScan ▴ 450
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1
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2.3k
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Answer: Answer: Nextflow and self-made pipelines opinion
9 months ago by DBScan ▴ 450
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0
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678
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
9 months ago by DBScan ▴ 450
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1
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678
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
9 months ago by DBScan ▴ 450
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1
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1.8k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
9 months ago by DBScan ▴ 450
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1
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1.8k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
9 months ago by DBScan ▴ 450
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1
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789
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Answer: Answer: how to extract variants from the vcf.gz files linked below?
9 months ago by DBScan ▴ 450
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1
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401
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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
9 months ago by DBScan ▴ 450
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0
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789
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
9 months ago by DBScan ▴ 450
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1
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789
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
9 months ago by DBScan ▴ 450
0
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1
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789
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
9 months ago by DBScan ▴ 450
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0
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1.2k
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Comment: Comment: difference betwween hail and plink
9 months ago by DBScan ▴ 450
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1
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720
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Answer: Answer: What is the best GWAS tool to use for a very large cohort data (UK Biobank data)
9 months ago by DBScan ▴ 450
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1
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1.0k
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Comment: Comment: PCA plot interpretation (single population)
10 months ago by DBScan ▴ 450
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1
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1.0k
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Answer: Answer: fill-from-fasta doesnt fill missing values in REF
10 months ago by DBScan ▴ 450
0
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0
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941
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
10 months ago by DBScan ▴ 450
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1
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831
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Answer: Answer: Suggestions for a simpler solution for collecting snakemake rule output in a tex
10 months ago by DBScan ▴ 450
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0
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1.2k
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Comment: Comment: Problem with DRAGEN RNAseq hashtable directory
10 months ago by DBScan ▴ 450
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2
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1.2k
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Answer: Answer: Problem with DRAGEN RNAseq hashtable directory
10 months ago by DBScan ▴ 450
1
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0
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533
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Answer: Answer: how to merge two files without duplicating same column
10 months ago by DBScan ▴ 450
1
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1
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1.1k
views
Comment: Comment: GIAB Benchmarking
10 months ago by DBScan ▴ 450
0
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1
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836
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Comment: Comment: Calculating number of SNPs in linkage disequilibrium at different thresholds fro
10 months ago by DBScan ▴ 450
0
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0
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756
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Comment: Comment: GATK version check failed
10 months ago by DBScan ▴ 450
1
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0
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1.9k
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Comment: Comment: Problem in installing 'magick' R package
12 months ago by DBScan ▴ 450
2
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1
reply
1.2k
views
Answer: Answer: Snakemake alignment script
14 months ago by DBScan ▴ 450
0
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0
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851
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Comment: Comment: Saving the output of LD pruning from SNPRelate package as a new GDS file
14 months ago by DBScan ▴ 450
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0
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728
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Answer: Answer: VCF QUAL field for multiple samples
14 months ago by DBScan ▴ 450
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2
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1.6k
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Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
15 months ago by DBScan ▴ 450
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1
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1.6k
views
Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
15 months ago by DBScan ▴ 450
89 results • Page 1 of 2
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