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4
votes
3
replies
4.5k
views
De Novo Assembly Using 'A5' Pipeline
illumina miseq
updated 4.1 years ago by 44k • written 11.6 years ago by ▴ 610
13
votes
8
replies
11k
views
How to make a custom blast db with taxon IDs from a taxid_map file
blast makeblastdb taxid_map
updated 4.9 years ago by ▴ 50 • written 8.4 years ago by ▴ 610
1
vote
0
replies
2.9k
views
Answer: A: Program for searching for a specific partition within a set of phylogenetic tree
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 610
0
votes
0
replies
11k
views
Answer: A: How to make a custom blast db with taxon IDs from a taxid_map file
8.4 years ago by rwn ▴ 610
0
votes
0
replies
11k
views
Comment: C: How to make a custom blast db with taxon IDs from a taxid_map file
8.4 years ago by rwn ▴ 610
0
votes
3
replies
3.9k
views
Parsing HMMER output with BioPerl
HMMER Bioperl
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 610
11
votes
7
replies
7.6k
views
Bioperl Get Gene Id From Protein Accession Using Eutilities
bioperl ncbi
10.0 years ago by rwn ▴ 610
1
vote
1
reply
20k
views
Comment: Comment: BLAST definition and difference between 'qcovs' and 'qcovhsp'
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 610
23
votes
4
replies
20k
views
BLAST definition and difference between 'qcovs' and 'qcovhsp'
blast qcovs qcovhsp query coverage
updated 2.1 years ago by • 0 • written 10.0 years ago by ▴ 610
1
vote
1
reply
8.6k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
0
votes
1
reply
8.6k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
1
vote
1
reply
8.6k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
0
votes
1
reply
8.6k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
4
votes
1
reply
8.6k
views
Answer: Answer: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
1
vote
1
reply
8.6k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
1
vote
1
reply
8.6k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
0
votes
1
reply
8.6k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
1
vote
2
replies
8.6k
views
Comment: C: How to retrieve gene sequences and their products from NCBI's FTP?
10.1 years ago by rwn ▴ 610
0
votes
1
reply
8.6k
views
Answer: A: How to retrieve gene sequences and their products from NCBI's FTP?
10.1 years ago by rwn ▴ 610
0
votes
0
replies
3.7k
views
Comment: Comment: GO gene enrichment test in non model organism (bacteria)
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
1
vote
2
replies
3.7k
views
GO gene enrichment test in non model organism (bacteria)
enrichment GO blast2go gene-ontology goeast
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 610
1
vote
0
replies
12k
views
Answer: Answer: how to convert a NEXUS treefile to a Newick ultrametric treefile
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 610
0
votes
1
reply
9.8k
views
Comment: C: remove fasta file heading
10.2 years ago by rwn ▴ 610
1
vote
0
replies
9.1k
views
Comment: Comment: What OrthoMCL input file and output looks like?
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 610
2
votes
1
reply
5.6k
views
Answer: Answer: NCBI GeneID vs ProteinID database
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 610
1
vote
1
reply
2.5k
views
Comment: Comment: Gene Function through sequence homology
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 610
5
votes
0
replies
9.1k
views
Answer: A: What OrthoMCL input file and output looks like?
10.2 years ago by rwn ▴ 610
0
votes
0
replies
3.9k
views
Comment: Comment: Parsing HMMER output with BioPerl
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 610
0
votes
0
replies
13k
views
Comment: C: Pros and Cons of HMMER versus BLAST
10.2 years ago by rwn ▴ 610
11
votes
3
replies
13k
views
Pros and Cons of HMMER versus BLAST
hmmer homology BLAST hidden-Markov-models
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 610
1
vote
0
replies
7.8k
views
Comment: C: Total length covered by BAM alignment (or BED file)
10.3 years ago by rwn ▴ 610
0
votes
1
reply
7.8k
views
Comment: C: Total length covered by BAM alignment (or BED file)
10.3 years ago by rwn ▴ 610
0
votes
0
replies
7.8k
views
Comment: C: Total length covered by BAM alignment (or BED file)
10.3 years ago by rwn ▴ 610
11
votes
10
replies
7.8k
views
Total length covered by BAM alignment (or BED file)
Perl Bed Bam
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 610
0
votes
1
reply
7.8k
views
Comment: Comment: Total length covered by BAM alignment (or BED file)
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 610
0
votes
0
replies
4.1k
views
Comment: C: VCF filtering with a maximum coverage threshold
10.4 years ago by rwn ▴ 610
2
votes
2
replies
4.1k
views
VCF filtering with a maximum coverage threshold
VCF freebayes SNPs vcffilter bacteria
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 610
5
votes
4
replies
2.9k
views
Program for searching for a specific partition within a set of phylogenetic trees
phylogenetics
10.5 years ago by rwn ▴ 610
0
votes
1
reply
2.9k
views
Comment: C: Program for searching for a specific partition within a set of phylogenetic tree
10.5 years ago by rwn ▴ 610
3
votes
0
replies
3.5k
views
Answer: A: Strange Behaviour Of Bioperl'S Bio::Searchio When Parsing Xml Blast Output
11.0 years ago by rwn ▴ 610
3
votes
1
reply
3.5k
views
Strange Behaviour Of Bioperl'S Bio::Searchio When Parsing Xml Blast Output
blast perl bioperl xml
11.0 years ago by rwn ▴ 610
2
votes
1
reply
3.0k
views
How To Set -Max_Coverage In Velvetg
velvet genomics
updated 11.2 years ago by ▴ 980 • written 11.6 years ago by ▴ 610
2
votes
0
replies
4.5k
views
Comment: C: De Novo Assembly Using 'A5' Pipeline
11.6 years ago by rwn ▴ 610
2
votes
1
reply
7.6k
views
Answer: A: Bioperl Get Gene Id From Protein Accession Using Eutilities
11.7 years ago by rwn ▴ 610
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