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Comment: Comment: Should I normalize read counts if I want to run plotPCA?
12 months ago by ella • 0
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1
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1.1k
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Comment: Comment: How to turn a column into a character string (to execute filterbyname.sh of the
13 months ago by ella • 0
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
13 months ago by ella • 0
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7
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1.1k
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How to turn a column into a character string (to execute filterbyname.sh of the BBTools suite)
BBTools filterbyname.sh bash
updated 13 months ago by 45k • written 13 months ago by • 0
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1
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1.1k
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Comment: Comment: How to turn a column into a character string (to execute filterbyname.sh of the
13 months ago by ella • 0
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1.2k
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Comment: Comment: plotCounts() error in R: indexing outside of limit
13 months ago by ella • 0
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1
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1.2k
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Comment: Comment: plotCounts() error in R: indexing outside of limit
14 months ago by ella • 0
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1.2k
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Comment: Comment: plotCounts() error in R: indexing outside of limit
14 months ago by ella • 0
2
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5
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1.2k
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plotCounts() error in R: indexing outside of limit
R DESeq2 DEG
13 months ago by ella • 0
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1
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637
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Comment: Comment: Removal of overexpression construct prior to analysis of differentially expresse
15 months ago by ella • 0
2
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3
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637
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Removal of overexpression construct prior to analysis of differentially expressed genes/ salmon?
DEG RNASeq DGE salmon DESeq2
updated 15 months ago by 150k • written 15 months ago by • 0
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
18 months ago by ella • 0
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2
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
updated 13 months ago by 45k • written 18 months ago by • 0
0
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1
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
18 months ago by ella • 0
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0
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
18 months ago by ella • 0
0
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1
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
18 months ago by ella • 0
0
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0
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
updated 18 months ago by 150k • written 18 months ago by • 0
0
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0
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
18 months ago by ella • 0
0
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1
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3.3k
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Comment: Comment: How to subset large BAM files specifically/ extract specific subsets?
18 months ago by ella • 0
4
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16
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3.3k
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How to subset large BAM files specifically/ extract specific subsets?
bamtools RNAseq samtools BAM
updated 13 months ago by 45k • written 18 months ago by • 0
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1
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125k
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Comment: Comment: How To Split A Bam File By Chromosome
18 months ago by ella • 0
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1.1k
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Comment: Comment: How to find out what adapters to remove after FastQC of RNAseq data?
18 months ago by ella • 0
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1
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1.1k
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Comment: Comment: How to find out what adapters to remove after FastQC of RNAseq data?
18 months ago by ella • 0
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3
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1.1k
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How to find out what adapters to remove after FastQC of RNAseq data?
Trimmomatic FastQC NGS RNA-seq
18 months ago by ella • 0
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0
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435
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DGE analyses after expressing a construct - prior removal of construct-mapping reads?
RNAseq DGE Salmon DEG DESeq2
2.7 years ago by ella • 0
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0
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4.5k
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Comment: Comment: How do I match my transcript ID's from NCBI to the corresponding gene ID's to en
updated 2.7 years ago by 150k • written 2.7 years ago by • 0
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1
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1.5k
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Comment: Comment: Removing uncovered transcripts from multi FASTA reference file
3.3 years ago by ella • 0
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0
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1.5k
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Comment: Comment: Removing uncovered transcripts from multi FASTA reference file
3.5 years ago by ella • 0
0
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0
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1.5k
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Comment: Comment: Removing uncovered transcripts from multi FASTA reference file
3.5 years ago by ella • 0
3
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6
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1.5k
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Removing uncovered transcripts from multi FASTA reference file
RNASeq NGS Mapping reference FASTA
updated 3.3 years ago by 150k • written 3.5 years ago by • 0
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0
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2.3k
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Comment: Comment: Trimming overrepresented sequence possible with Trimmomatic?
3.7 years ago by ella • 0
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0
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2.3k
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Comment: Comment: Trimming overrepresented sequence possible with Trimmomatic?
3.7 years ago by ella • 0
0
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1
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2.3k
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Comment: Comment: Trimming overrepresented sequence possible with Trimmomatic?
3.8 years ago by ella • 0
3
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6
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2.3k
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Trimming overrepresented sequence possible with Trimmomatic?
rnaseq ngs overexpression trimmomatic gsnap
3.7 years ago by ella • 0
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0
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2.3k
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Comment: Comment: Trimming overrepresented sequence possible with Trimmomatic?
3.8 years ago by ella • 0
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0
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1.2k
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Comment: C: Puzzling NCBI BLAST+ output after transcriptome assembly
4.1 years ago by ella • 0
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2
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1.2k
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Comment: C: Puzzling NCBI BLAST+ output after transcriptome assembly
4.1 years ago by ella • 0
3
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8
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1.2k
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Puzzling NCBI BLAST+ output after transcriptome assembly
blast ncbi fasta transcriptome trinity
updated 4.1 years ago by 35k • written 4.1 years ago by • 0
1
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1
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2.0k
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determining read-depth of given size of genomic window via samtools
RNA-Seq next-gen samtools read-depth
4.6 years ago by ella • 0
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