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325
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Comment: Comment: Vcf Filtering
5 days ago by Jeremy Leipzig 23k
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1
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470
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Answer: Answer: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
20 days ago by Jeremy Leipzig 23k
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1
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386
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Answer: Answer: How to Resolve Reference Mismatch While Extracting Gene Variants from 1000 Genom
20 days ago by Jeremy Leipzig 23k
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0
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470
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Comment: Comment: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
21 days ago by Jeremy Leipzig 23k
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0
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750
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Comment: Comment: Non Variant Sites in GVCF File
5 weeks ago by Jeremy Leipzig 23k
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1
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750
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Answer: Answer: Non Variant Sites in GVCF File
5 weeks ago by Jeremy Leipzig 23k
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349
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Answer: Answer: Does TCGA data only use host reads to make pre-processed data (CNV, Mutations st
5 weeks ago by Jeremy Leipzig 23k
1
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0
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788
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Comment: Comment: Blast with variable number of Ns
6 weeks ago by Jeremy Leipzig 23k
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0
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247
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Comment: Comment: Regarding ClinVar's VCF file
6 weeks ago by Jeremy Leipzig 23k
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0
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489
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Comment: Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
6 weeks ago by Jeremy Leipzig 23k
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0
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489
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Comment: Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
6 weeks ago by Jeremy Leipzig 23k
0
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1
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489
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Comment: Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
6 weeks ago by Jeremy Leipzig 23k
1
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6
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489
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English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded genotype (0/1)
genotypes vcf
6 weeks ago by Jeremy Leipzig 23k
0
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1
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466
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Answer: Answer: Ensembl vep GRCh38 cache version
7 weeks ago by Jeremy Leipzig 23k
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0
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464
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Comment: Comment: Can I combine variants called using T2T-CHM13 with GRCh38?
9 weeks ago by Jeremy Leipzig 23k
2
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0
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359
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Answer: Answer: Getting gnomAD allele frequencies for checking against populations
9 weeks ago by Jeremy Leipzig 23k
1
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1
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590
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Comment: Comment: Experienced Bioinformatician Seeking Opportunities in NGS Data Analysis and Pipe
10 weeks ago by Jeremy Leipzig 23k
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1
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505
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Comment: Comment: A notebook for checking relatedness and X heterozygosity from sequencing data
11 weeks ago by Jeremy Leipzig 23k
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1
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832
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Comment: Comment: Any Paper: Ultra-fast QA and literature search based on Pubmed papers.
11 weeks ago by Jeremy Leipzig 23k
1
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6
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873
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What is a genomic range that would almost always get decent WGS coverage but is never covered by WES?
wes wgs
updated 12 weeks ago by 21k • written 12 weeks ago by 23k
0
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1
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873
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Comment: Comment: What is a genomic range that would almost always get decent WGS coverage but is
12 weeks ago by Jeremy Leipzig 23k
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0
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873
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Comment: Comment: What is a genomic range that would almost always get decent WGS coverage but is
12 weeks ago by Jeremy Leipzig 23k
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0
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1.4k
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Comment: Comment: failing to install rMATS
3 months ago by Jeremy Leipzig 23k
0
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0
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471
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Comment: Comment: Snakemake expand(): using a helper function (zip) and imputing wildcards?
3 months ago by Jeremy Leipzig 23k
2
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2
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597
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Answer: Answer: Why higher read counts in chromosome M/MT
3 months ago by Jeremy Leipzig 23k
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0
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632
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Comment: Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
3 months ago by Jeremy Leipzig 23k
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1
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632
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Comment: Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
3 months ago by Jeremy Leipzig 23k
0
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1
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632
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Comment: Comment: Overlapping reads, how do we counter them while variant calling, haplotype calli
3 months ago by Jeremy Leipzig 23k
1
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0
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466
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Answer: Answer: Use of gVCF by clinical sequencing labs
3 months ago by Jeremy Leipzig 23k
0
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0
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466
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Comment: Comment: Use of gVCF by clinical sequencing labs
3 months ago by Jeremy Leipzig 23k
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0
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454
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Answer: Answer: Where can I find a database of healthy genotypes as well as a database of geneti
3 months ago by Jeremy Leipzig 23k
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2
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1.4k
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Answer: Answer: Can't reproduce harmony results in Seurat
4 months ago by Jeremy Leipzig 23k
2
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0
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368
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Answer: Answer: Why does the AD value of my VCF file display 3 values?
4 months ago by Jeremy Leipzig 23k
1
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0
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582
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Comment: Comment: Ancestry estimation using 1000 genomes as reference
4 months ago by Jeremy Leipzig 23k
0
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1
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456
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Answer: Answer: How can we determine or find the insertion time of Numts?
5 months ago by Jeremy Leipzig 23k
0
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2
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1.7k
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Comment: Comment: Proper reanotation of genepanel with snpEff and dbNSFP
5 months ago by Jeremy Leipzig 23k
0
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1
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1.7k
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Comment: Comment: Proper reanotation of genepanel with snpEff and dbNSFP
6 months ago by Jeremy Leipzig 23k
0
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1
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1.7k
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Comment: Comment: Proper reanotation of genepanel with snpEff and dbNSFP
6 months ago by Jeremy Leipzig 23k
2
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1
reply
1.7k
views
Comment: Comment: Proper reanotation of genepanel with snpEff and dbNSFP
6 months ago by Jeremy Leipzig 23k
4
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1
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1.7k
views
Answer: Answer: Proper reanotation of genepanel with snpEff and dbNSFP
6 months ago by Jeremy Leipzig 23k
0
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0
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1.1k
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Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
6 months ago by Jeremy Leipzig 23k
0
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0
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442
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Answer: Answer: GATK GenomicsDBImport update database error using snakemake
6 months ago by Jeremy Leipzig 23k
0
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0
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771
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Answer: Answer: How can I get an allele count table from a .vcf file?
6 months ago by Jeremy Leipzig 23k
0
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0
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384
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Comment: Comment: Count and filter sites with degenarate bases in VCF files
6 months ago by Jeremy Leipzig 23k
1
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1
reply
932
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Comment: Comment: Does PRS distribution of target data should follow gaussian distribution?
7 months ago by Jeremy Leipzig 23k
2
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0
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575
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Answer: Answer: VCFtools indels/SNP treatment
7 months ago by Jeremy Leipzig 23k
0
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1
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575
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Comment: Comment: VCFtools indels/SNP treatment
7 months ago by Jeremy Leipzig 23k
1
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1
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1.2k
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Answer: Answer: Alignment tool for very short reads (25bp)
7 months ago by Jeremy Leipzig 23k
1
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0
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896
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Comment: Comment: Looking for clarification of .vcf output from variant calling
7 months ago by Jeremy Leipzig 23k
0
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1
reply
896
views
Comment: Comment: Looking for clarification of .vcf output from variant calling
7 months ago by Jeremy Leipzig 23k
1,388 results • Page 1 of 28
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