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0
votes
0
replies
1.2k
views
How do I filter based on variant allelle frequency in GATK HaplotypeCaller VCF
SNP
indels
RNA-Seq
4.2 years ago by
danson.wooi
• 0
0
votes
0
replies
727
views
How take advantage of ERCC spike-ins to improve variant calling
SNP
RNA-Seq
indel
4.3 years ago by
danson.wooi
• 0
1
vote
1
reply
2.0k
views
GATK for RNA seq variant calling
RNA-Seq
snp
variant calling
4.3 years ago by
danson.wooi
• 0
0
votes
1
reply
769
views
How do I find the network path for the interaction of 2 genes
RNA-Seq
transcriptomics
gene
network
updated 4.3 years ago by
Kevin Blighe
88k • written 4.3 years ago by
danson.wooi
• 0
2
votes
2
replies
926
views
Is it better to use a merged transcriptome or the reference annotation for RSEM gene expression
rsem
gene_expression
RNA-Seq
updated 4.3 years ago by
swbarnes2
14k • written 4.3 years ago by
danson.wooi
• 0
1
vote
1
reply
841
views
How to find out the domains encoded by each exon and predict gene isoform role/function?
RNA-Seq
genome
isoforms
genes
splicing
updated 4.3 years ago by
caggtaagtat
★ 1.9k • written 4.3 years ago by
danson.wooi
• 0
0
votes
0
replies
715
views
GSEA and pathway analysis on a small subset of genes
GSEA
KEGG
RNA-Seq
targeted-rna-seq
microarray
4.3 years ago by
danson.wooi
• 0
0
votes
0
replies
852
views
Comment:
C: Is it feasible to look for mutations in RNA-seq data from FFPE samples?
4.3 years ago by
danson.wooi
• 0
0
votes
1
reply
852
views
Comment:
C: Is it feasible to look for mutations in RNA-seq data from FFPE samples?
4.3 years ago by
danson.wooi
• 0
1
vote
4
replies
852
views
Is it feasible to look for mutations in RNA-seq data from FFPE samples?
RNA-Seq
SNP
gene
R
4.3 years ago by
danson.wooi
• 0
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