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2.6k
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Comment: Comment: counting number of CpGs that are methylated and unmethylated in a read of whole
22 days ago by Devon Ryan 104k
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621
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Comment: Comment: Inconsistent Methylation Levels Between Pairs in WGBS Data After Moving to NovaS
22 days ago by Devon Ryan 104k
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494
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Comment: Comment: Upward Sloping P Value Distribution in ATAC-seq Analysis
4 months ago by Devon Ryan 104k
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494
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Comment: Comment: Upward Sloping P Value Distribution in ATAC-seq Analysis
5 months ago by Devon Ryan 104k
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1
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916
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Comment: Comment: Interaction analysis using DESeq while adjusting for covariates.
5 months ago by Devon Ryan 104k
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1
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916
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Answer: Answer: Interaction analysis using DESeq while adjusting for covariates.
5 months ago by Devon Ryan 104k
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1
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879
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Comment: Comment: Deeptools scale issue for plotHeatmap
8 months ago by Devon Ryan 104k
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1
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879
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Comment: Comment: Deeptools scale issue for plotHeatmap
8 months ago by Devon Ryan 104k
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1
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879
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Comment: Comment: Deeptools scale issue for plotHeatmap
8 months ago by Devon Ryan 104k
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1.3k
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Answer: Answer: --normalizeUsing RPGC
10 months ago by Devon Ryan 104k
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1
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765
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Comment: Comment: Wrong in Deeptools : the enrichment of TSS and TES region are similar when using
13 months ago by Devon Ryan 104k
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0
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782
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Comment: Comment: How to get ncol = nrow?
14 months ago by Devon Ryan 104k
2
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1
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2.0k
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Comment: Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
15 months ago by Devon Ryan 104k
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679
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Comment: Comment: DESeq2 : parameter of Negative Binomial model in a context of gene expression
18 months ago by Devon Ryan 104k
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1.3k
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Answer: Answer: No differentially expressed genes after multiple testing correction in mice
19 months ago by Devon Ryan 104k
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3.1k
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Answer: Answer: Bioinformatics opportunities in Europe?
20 months ago by Devon Ryan 104k
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1.1k
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Comment: Comment: How Wald test calculates p-values in DESeq2?
2.2 years ago by Devon Ryan 104k
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1
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15k
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Comment: Comment: Convert fastq.gz to fastq.bgz
2.2 years ago by Devon Ryan 104k
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0
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746
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Comment: Comment: Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
2.2 years ago by Devon Ryan 104k
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2.3k
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Comment: Comment: Come work with me! Bioinformatician - Boston MA
2.2 years ago by Devon Ryan 104k
1
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1
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2.3k
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Comment: Comment: Come work with me! Bioinformatician - Boston MA
2.2 years ago by Devon Ryan 104k
7
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6
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2.3k
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Job: Come work with me! Bioinformatician - Boston MA
bioinformatician
updated 17 months ago by 44k • written 2.2 years ago by 104k
2
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1
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838
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Answer: Answer: Do edger, limma and deseq2 can be used with datasets from UMIs
2.5 years ago by Devon Ryan 104k
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1
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811
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Comment: Comment: Calculate the ratio of H3K4me3 to H3K4me1 using output of deeptools computeMatri
2.6 years ago by Devon Ryan 104k
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0
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1.0k
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Answer: Answer: Interpreting output produced by computeMatrix reference-point
2.6 years ago by Devon Ryan 104k
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1
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2.2k
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Comment: Comment: Pool or not to pool
2.7 years ago by Devon Ryan 104k
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1
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2.2k
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Comment: Comment: Pool or not to pool
2.7 years ago by Devon Ryan 104k
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1
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2.2k
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Comment: Comment: Pool or not to pool
2.7 years ago by Devon Ryan 104k
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1
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1.7k
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Comment: Comment: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
2.7 years ago by Devon Ryan 104k
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0
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4.1k
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Comment: Comment: Why piping a conda command into bash doesn't work ?
2.7 years ago by Devon Ryan 104k
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2
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4.1k
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Comment: Comment: Why piping a conda command into bash doesn't work ?
2.7 years ago by Devon Ryan 104k
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0
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2.8k
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Comment: Comment: Extracting Methylation Data
2.8 years ago by Devon Ryan 104k
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0
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2.8k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
2.8 years ago by Devon Ryan 104k
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0
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1.2k
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Comment: Comment: bisulfite methylation alignment rate
2.8 years ago by Devon Ryan 104k
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0
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11k
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Comment: Comment: DESeq2 modelling and Wald's test
2.9 years ago by Devon Ryan 104k
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1
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2.8k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
2.9 years ago by Devon Ryan 104k
2
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1
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3.2k
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Comment: Comment: normalization for unsupervised analysis by DESeq2
2.9 years ago by Devon Ryan 104k
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1
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1.2k
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Comment: Comment: bisulfite methylation alignment rate
2.9 years ago by Devon Ryan 104k
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0
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4.6k
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Comment: Comment: HIsat2 bam and summary output - multiple output file type
2.9 years ago by Devon Ryan 104k
2
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0
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3.2k
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Comment: Comment: normalization for unsupervised analysis by DESeq2
2.9 years ago by Devon Ryan 104k
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0
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9.5k
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Comment: Comment: featureCounts isoform vs gene summarization
2.9 years ago by Devon Ryan 104k
2
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0
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953
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Answer: Answer: deeptools plotprofile TSS and TES are very close
2.9 years ago by Devon Ryan 104k
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0
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2.2k
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Comment: Comment: delete a file
2.9 years ago by Devon Ryan 104k
2
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0
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984
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Answer: Answer: multiBamSummary for unpaired end read?
3.0 years ago by Devon Ryan 104k
0
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1
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1.6k
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Answer: Answer: Log2 Scale Deeptools
3.0 years ago by Devon Ryan 104k
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0
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1.6k
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Comment: Comment: Log2 Scale Deeptools
3.0 years ago by Devon Ryan 104k
3
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1
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1.9k
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Answer: Answer: Errors when ajusting pvalue on R
3.0 years ago by Devon Ryan 104k
2
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0
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2.0k
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Answer: Answer: Normalizing BAM Files
3.0 years ago by Devon Ryan 104k
1
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0
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2.3k
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Answer: Answer: deeptools reference-point center
3.1 years ago by Devon Ryan 104k
1
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1
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2.0k
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Comment: Comment: ? in cram files
3.1 years ago by Devon Ryan 104k
10,047 results • Page 1 of 201
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