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Comment: C: What are those black lines in my heatmap?
3.8 years ago by Devon Ryan 104k
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3.4k
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Answer: A: What are those black lines in my heatmap?
3.9 years ago by Devon Ryan 104k
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Comment: C: BigWig from ensembl assembly to UCSC session
3.9 years ago by Devon Ryan 104k
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4.3k
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Comment: C: BigWig from ensembl assembly to UCSC session
3.9 years ago by Devon Ryan 104k
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Comment: C: how is obtained the BED score values (the 5th column of the bed files) in BED fi
3.9 years ago by Devon Ryan 104k
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Answer: A: error with vcfutils when building consensus sequence with samtools and bcftools
updated 3.9 years ago by 44k • written 9.8 years ago by 104k
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1.9k
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Comment: C: hisat2 alignment error
3.9 years ago by Devon Ryan 104k
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Answer: A: ATAC-seq +4 -5 shift
3.9 years ago by Devon Ryan 104k
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2.8k
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Comment: C: Extracting Methylation Data
4.0 years ago by Devon Ryan 104k
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1.4k
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Answer: C: Counting data with ht seq
4.0 years ago by Devon Ryan 104k
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2.3k
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Answer: A: Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in
4.0 years ago by Devon Ryan 104k
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Answer: Answer: Are topics such as Metagenomics and Genome Editing a good start for someone new
updated 2.7 years ago by 44k • written 9.9 years ago by 104k
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1.1k
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Comment: C: Is there a stagewise testing procedure for DESeq2?
4.0 years ago by Devon Ryan 104k
3
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1.1k
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Answer: Answer: Is there a stagewise testing procedure for DESeq2?
4.0 years ago by Devon Ryan 104k
2
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2.9k
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Comment: C: How to count the number of codons in a frame or order using the equation?
4.0 years ago by Devon Ryan 104k
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2.9k
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Comment: C: RNAseq bad PCA, a differential expression analysis killer ?
4.0 years ago by Devon Ryan 104k
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1.5k
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Answer: A: Converting to decimal values
4.0 years ago by Devon Ryan 104k
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2.9k
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Comment: C: RNAseq bad PCA, a differential expression analysis killer ?
4.0 years ago by Devon Ryan 104k
1
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1
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2.9k
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Answer: A: How to count the number of codons in a frame or order using the equation?
4.0 years ago by Devon Ryan 104k
2
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1
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8.4k
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Comment: C: Deseq2 with one factor and multiple levels
4.0 years ago by Devon Ryan 104k
2
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8.4k
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Comment: C: Deseq2 with one factor and multiple levels
4.0 years ago by Devon Ryan 104k
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3.1k
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Answer: A: DeepTools plotProfile y axis units?
4.1 years ago by Devon Ryan 104k
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1
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1.6k
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Answer: A: MultiBamSummary for correlating ChIPseq datasets
4.1 years ago by Devon Ryan 104k
10
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1
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6.1k
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Answer: A: Scaling vs normalization in bamCompare
4.1 years ago by Devon Ryan 104k
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39k
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Answer: A: how to convert a long fasta-file into many separate single fasta sequences
updated 4.1 years ago by 44k • written 10.4 years ago by 104k
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7.2k
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Answer: C: update salmon with conda
4.1 years ago by Devon Ryan 104k
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4.6k
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Comment: C: Doubt on removing duplicates on amplicon sequencing data
4.1 years ago by Devon Ryan 104k
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4.9k
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Comment: C: deepTools computeMatrix need at least one array to concatenate error
4.1 years ago by Devon Ryan 104k
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5.2k
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Comment: C: Samtool (Faidx) - Signal 11 Termination Error
updated 4.2 years ago by 44k • written 11.4 years ago by 104k
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1.1k
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Comment: C: Plot a dotted line to the start of the regions in computeMatrix, deepTools
4.2 years ago by Devon Ryan 104k
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2.5k
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Comment: C: Comparing input read subtracted ChIP-read profiles using Deeptools v3.4.3
4.2 years ago by Devon Ryan 104k
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2.5k
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Answer: A: Comparing input read subtracted ChIP-read profiles using Deeptools2
4.2 years ago by Devon Ryan 104k
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1
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1.1k
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Answer: A: Flip the heatmaps of ChIP-seq data to match TSS of +/- strand in deeptools
4.2 years ago by Devon Ryan 104k
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1
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1.1k
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Answer: A: Plot a dotted line to the start of the regions in computeMatrix, deepTools
4.2 years ago by Devon Ryan 104k
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1
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9.6k
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Comment: C: GTF/GFF file for feature count
4.2 years ago by Devon Ryan 104k
2
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2.7k
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Answer: A: Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in
4.2 years ago by Devon Ryan 104k
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1.9k
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Comment: C: Deeptools correlation plot: between RNAseq and H3K27ac ChIPseq
4.2 years ago by Devon Ryan 104k
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1
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1.9k
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Comment: C: Deeptools correlation plot: between RNAseq and H3K27ac ChIPseq
4.2 years ago by Devon Ryan 104k
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1.2k
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Answer: A: what the mean of Genomic content
4.2 years ago by Devon Ryan 104k
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1.2k
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Comment: C: what the mean of Genomic content
4.2 years ago by Devon Ryan 104k
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2.4k
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Comment: C: What statistical test for CpG DMR ?
4.2 years ago by Devon Ryan 104k
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3.8k
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Comment: C: DiffBind - normalization methods with biologically-relevant differences in signa
4.2 years ago by Devon Ryan 104k
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1.7k
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Comment: C: help with segmentation fault deeptools
4.2 years ago by Devon Ryan 104k
1
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1
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1.7k
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Answer: C: What is "Possible polymerase run-on fragment"?
updated 4.3 years ago by 44k • written 6.5 years ago by 104k
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1
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1.7k
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Comment: C: help with segmentation fault deeptools
4.3 years ago by Devon Ryan 104k
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6.1k
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Comment: C: What is difference between bulk RNAseq and mRNAseq?
4.3 years ago by Devon Ryan 104k
2
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1
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19k
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Answer: A: Benjamini+ Hochberg multiple testing p.adjust R
4.3 years ago by Devon Ryan 104k
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19k
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Comment: C: Benjamini+ Hochberg multiple testing p.adjust R
4.3 years ago by Devon Ryan 104k
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4.4k
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Comment: C: Calculating fold change
4.3 years ago by Devon Ryan 104k
0
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1
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6.1k
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Comment: C: What is difference between bulk RNAseq and mRNAseq?
4.3 years ago by Devon Ryan 104k
10,047 results • Page 3 of 201
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