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Comment: C: Samtools merge BAM files using snakemake
4.3 years ago by Devon Ryan 104k
1
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2.7k
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Comment: C: deepTools NPZ to PCA plot with modifications
4.3 years ago by Devon Ryan 104k
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2.8k
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Comment: C: Samtools merge BAM files using snakemake
4.3 years ago by Devon Ryan 104k
1
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2.8k
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Comment: C: Samtools merge BAM files using snakemake
4.3 years ago by Devon Ryan 104k
0
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1
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2.8k
views
Comment: C: Samtools merge BAM files using snakemake
4.3 years ago by Devon Ryan 104k
2
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1
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2.7k
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Comment: C: deepTools NPZ to PCA plot with modifications
4.3 years ago by Devon Ryan 104k
0
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1
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2.8k
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Comment: C: Samtools merge BAM files using snakemake
4.3 years ago by Devon Ryan 104k
0
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1
reply
2.8k
views
Comment: C: Samtools merge BAM files using snakemake
4.3 years ago by Devon Ryan 104k
2
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1
reply
2.8k
views
Answer: A: Samtools merge BAM files using snakemake
4.3 years ago by Devon Ryan 104k
0
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2.7k
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Comment: C: deepTools NPZ to PCA plot with modifications
4.3 years ago by Devon Ryan 104k
2
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2
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2.7k
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Answer: A: deepTools NPZ to PCA plot with modifications
4.3 years ago by Devon Ryan 104k
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6.0k
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Answer: C: Help with DeepTools
4.3 years ago by Devon Ryan 104k
5
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1
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1.5k
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Answer: A: Which is the best approach to get DEG across one condition, in a three-factor de
4.3 years ago by Devon Ryan 104k
2
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1
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814
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Answer: A: Python base versus specific environments
4.3 years ago by Devon Ryan 104k
1
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1
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3.2k
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Comment: C: SizeFactors for BAM normalization
4.3 years ago by Devon Ryan 104k
2
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2
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3.2k
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Comment: C: SizeFactors for BAM normalization
4.3 years ago by Devon Ryan 104k
2
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1
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4.9k
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Answer: A: Limma:Coefficients not estimable, please help
4.3 years ago by Devon Ryan 104k
5
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2
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3.2k
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Answer: A: SizeFactors for BAM normalization
4.3 years ago by Devon Ryan 104k
1
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0
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4.6k
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Comment: C: TSS metaprofile using Deeptools
4.4 years ago by Devon Ryan 104k
1
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1
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9.6k
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Comment: C: cram file to fastq conversion
4.4 years ago by Devon Ryan 104k
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0
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4.8k
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Comment: C: Deeptools ValueError: invalid literal for int() with base 10 error
4.4 years ago by Devon Ryan 104k
0
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1
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4.8k
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Comment: C: Deeptools ValueError: invalid literal for int() with base 10 error
4.4 years ago by Devon Ryan 104k
0
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1
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4.8k
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Comment: C: Deeptools ValueError: invalid literal for int() with base 10 error
4.4 years ago by Devon Ryan 104k
0
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1
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1.7k
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Comment: C: Salmon or Kallisto without reference transcriptome - possible?
4.4 years ago by Devon Ryan 104k
1
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11k
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Comment: C: featureCounts for paired bam files and dealing with multimapping reads?
4.4 years ago by Devon Ryan 104k
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0
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15k
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Comment: C: Extract gene coordinates from GTF
4.4 years ago by Devon Ryan 104k
2
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2
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6.6k
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Comment: C: Is removing rRNA a necessary step in RNA-seq?
4.4 years ago by Devon Ryan 104k
6
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927
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Answer: A: How to make it significant
4.4 years ago by Devon Ryan 104k
1
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2.0k
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Comment: C: how to extract intron coordinates (in bed) from bam
4.4 years ago by Devon Ryan 104k
2
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0
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7.9k
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Comment: C: Converting scRNA-Seq to Bulk-RNASeq
4.4 years ago by Devon Ryan 104k
1
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1
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4.4k
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Comment: C: How to find the differences in aligned bam files
4.4 years ago by Devon Ryan 104k
0
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0
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8.1k
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Comment: C: Featurecounts to DESEq2 - How to merge biological replicates?
4.4 years ago by Devon Ryan 104k
2
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1
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17k
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Answer: A: type='apeglm' shrinkage only for use with 'coef'
4.4 years ago by Devon Ryan 104k
1
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1
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2.0k
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Comment: C: how to extract intron coordinates (in bed) from bam
4.4 years ago by Devon Ryan 104k
0
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1
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2.0k
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Comment: C: how to extract intron coordinates (in bed) from bam
4.4 years ago by Devon Ryan 104k
0
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0
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2.6k
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Comment: C: ATAC-Seq: Filter bams for differential analysis or not
4.4 years ago by Devon Ryan 104k
3
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0
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1.7k
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Answer: A: Want to create a new Index file for BAM using SAMTOOLS. Do I need to sort the de
4.4 years ago by Devon Ryan 104k
0
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2
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2.6k
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Answer: A: ATAC-Seq: Filter bams for differential analysis or not
4.4 years ago by Devon Ryan 104k
0
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1
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1.2k
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Comment: C: RPKM for multi-copy genes
4.4 years ago by Devon Ryan 104k
0
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1
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1.2k
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Comment: C: RPKM for multi-copy genes
4.4 years ago by Devon Ryan 104k
1
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1
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4.4k
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Comment: C: How to find the differences in aligned bam files
4.4 years ago by Devon Ryan 104k
2
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1
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4.4k
views
Comment: C: How to find the differences in aligned bam files
4.4 years ago by Devon Ryan 104k
3
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0
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889
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Answer: A: deeptools computeGCbias: what are the columns in the GCbiasFrequenciesFile?
4.4 years ago by Devon Ryan 104k
1
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0
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2.0k
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Comment: C: DESeq results based on lfcthreshold
4.4 years ago by Devon Ryan 104k
0
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1
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4.9k
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Comment: C: deepTools computeMatrix need at least one array to concatenate error
4.4 years ago by Devon Ryan 104k
4
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1
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4.0k
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Answer: C: interpreting GC-bias compute and correct results from DeepTools
4.4 years ago by Devon Ryan 104k
0
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0
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4.8k
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Comment: C: Y axis PlotHeatMap Deeptools
4.4 years ago by Devon Ryan 104k
1
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0
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3.8k
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Comment: C: How to tell if a BigWig file is 1-based or 0-based?
4.4 years ago by Devon Ryan 104k
1
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0
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2.2k
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Comment: C: conda installation error in hypo
4.5 years ago by Devon Ryan 104k
4
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2
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2.9k
views
Answer: C: <DESeqDataSet>[i,] index out of bounds - subsetting DESeqDataSet
4.5 years ago by Devon Ryan 104k
10,047 results • Page 4 of 201
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