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Job: Bioinformatics Analyst/Post-Doctoral Associate (UT MD Anderson Cancer Center)
Genomics Immuno-Oncology Cancer-Bioinformatics Single-Cell
written 2.2 years ago by ▴ 300
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CNV loss and high expression
Copy expression number
updated 2.5 years ago by 6.2k • written 2.5 years ago by ▴ 300
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8
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7 follow
Extract Reads In Fastq Using A Bed File.
fastq bed
updated 2.8 years ago by • 0 • written 11.4 years ago by ▴ 300
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3
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1.4k
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TCGA Copy Number Data in Rdata format
TCGA Copy Number R Format
updated 3.9 years ago by • 0 • written 6.5 years ago by ▴ 300
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6
replies
5.3k
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Whole Exome From Whole Genome
exome genome
updated 4.6 years ago by 20 • written 12.9 years ago by ▴ 300
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1
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1.0k
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Driver analysis MutPanning trouble
Driver-Passenger Analysis next-gen
updated 4.6 years ago by • 0 • written 4.7 years ago by ▴ 300
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1
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1.7k
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deepTools white dots on black background
deeptools
updated 4.7 years ago by 20 • written 7.6 years ago by ▴ 300
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1
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3.7k
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Comment: C: KeyError in MACS2
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 300
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Comment: C: KeyError in MACS2
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 300
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20k
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Comment: C: Vcf To Maf (Mutation Annotation Format) Conversion ?
updated 5.1 years ago by 44k • written 12.9 years ago by ▴ 300
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Comment: C: Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
5.3 years ago by Kasthuri ▴ 300
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1.3k
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Comment: C: Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
5.3 years ago by Kasthuri ▴ 300
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4
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1.3k
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Enhancer prediction for Glioma Stem Cells (ChIP-Seq)
ChIP-Seq Enhancer
5.3 years ago by Kasthuri ▴ 300
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1.8k
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Comment: C: EdgeR differential expression and heatmap
5.8 years ago by Kasthuri ▴ 300
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2
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1.8k
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EdgeR differential expression and heatmap
RNA-Seq
5.8 years ago by Kasthuri ▴ 300
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1
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7.5k
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Comment: C: Error in GDCprepare
5.8 years ago by Kasthuri ▴ 300
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7.5k
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Comment: C: Error in GDCprepare
5.8 years ago by Kasthuri ▴ 300
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1
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7.5k
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Comment: C: Error in GDCprepare
5.8 years ago by Kasthuri ▴ 300
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1
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7.5k
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Comment: C: Error in GDCprepare
5.8 years ago by Kasthuri ▴ 300
5
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10
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7.5k
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Error in GDCprepare
TCGA
5.8 years ago by Kasthuri ▴ 300
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1
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992
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Comment: C: Does mitotic activity inversely correlate with HiC interactions data?
6.2 years ago by Kasthuri ▴ 300
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3
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992
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Does mitotic activity inversely correlate with HiC interactions data?
next-gen
updated 6.2 years ago by 27k • written 6.2 years ago by ▴ 300
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935
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Comment: C: Expanding bed format into single nucleotide resolution
6.2 years ago by Kasthuri ▴ 300
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2
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935
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Expanding bed format into single nucleotide resolution
genome
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 300
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1
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823
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Whole exomes - More than 3 time points
next-gen
6.3 years ago by Kasthuri ▴ 300
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0
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1.4k
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Comment: C: TCGA Copy Number Data in Rdata format
6.5 years ago by Kasthuri ▴ 300
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5
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5.2k
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Allele frequency of a gene from a .bam file.
allele frequency
updated 6.9 years ago by • 0 • written 7.6 years ago by ▴ 300
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0
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3.8k
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Comment: C: sciClone + clonEvol on WES
7.4 years ago by Kasthuri ▴ 300
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2
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3.8k
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sciClone + clonEvol on WES
Clonality Analysis
updated 7.4 years ago by ▴ 330 • written 7.4 years ago by ▴ 300
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0
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3.3k
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Comment: C: ATAC data analysis
7.4 years ago by Kasthuri ▴ 300
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3.3k
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Comment: C: ATAC data analysis
7.4 years ago by Kasthuri ▴ 300
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1
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3.3k
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Answer: A: ATAC data analysis
7.4 years ago by Kasthuri ▴ 300
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3.2k
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Comment: C: .clc to fastq
7.5 years ago by Kasthuri ▴ 300
2
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3
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3.2k
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.clc to fastq
RNA-Seq clc work bench
7.5 years ago by Kasthuri ▴ 300
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0
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2.1k
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Comment: C: Do I have to realign from scratch?
7.6 years ago by Kasthuri ▴ 300
8
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5
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2.1k
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Do I have to realign from scratch?
GATK incompatible contigs
updated 7.6 years ago by 147k • written 7.6 years ago by ▴ 300
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0
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5.2k
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Comment: C: Allele frequency of a gene from a .bam file.
7.6 years ago by Kasthuri ▴ 300
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0
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5.2k
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Comment: C: Allele frequency of a gene from a .bam file.
7.6 years ago by Kasthuri ▴ 300
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0
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1.7k
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Answer: A: deepTools white dots on black background
7.6 years ago by Kasthuri ▴ 300
0
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1
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2.1k
views
Running MSigDB locally *without* expression data
MSigDB command-line
updated 7.8 years ago by ★ 2.1k • written 8.8 years ago by ▴ 300
1
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0
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3.7k
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Comment: C: KeyError in MACS2
8.9 years ago by Kasthuri ▴ 300
5
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6
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3.7k
views
KeyError in MACS2
ChIP-Seq MACS2
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 300
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0
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3.0k
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Comment: Comment: Identifying germline and tumor samples
updated 3.7 years ago by 44k • written 10.1 years ago by ▴ 300
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1
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3.0k
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Comment: Comment: Identifying germline and tumor samples
updated 3.7 years ago by 44k • written 10.1 years ago by ▴ 300
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1
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3.0k
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Comment: Comment: Identifying germline and tumor samples
updated 3.7 years ago by 44k • written 10.1 years ago by ▴ 300
2
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9
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3.0k
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Identifying germline and tumor samples
Germline Tumor Normal
updated 3.7 years ago by 44k • written 10.1 years ago by ▴ 300
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1
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3.0k
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Comment: Comment: Question about CREST
updated 2.9 years ago by 44k • written 10.1 years ago by ▴ 300
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0
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5.5k
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Comment: C: Tools For Structural Variants
10.6 years ago by Kasthuri ▴ 300
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4
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5.5k
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Tools For Structural Variants
structural breakdancer
updated 10.6 years ago by ▴ 230 • written 10.6 years ago by ▴ 300
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0
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5.5k
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Comment: C: Tools For Structural Variants
10.6 years ago by Kasthuri ▴ 300
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