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Installing ggpubr in Docker container rocker/r-base??
ggpubr dockerfile docker r
updated 8 weeks ago by 45k • written 8 weeks ago by ▴ 30
0
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1
reply
847
views
Comment: Comment: How to remove duplicated SNPs based on MAF with Plink?
12 weeks ago by giulia.trauzzi ▴ 30
0
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0
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847
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Comment: Comment: How to remove duplicated SNPs based on MAF with Plink?
12 weeks ago by giulia.trauzzi ▴ 30
3
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5
replies
847
views
How to remove duplicated SNPs based on MAF with Plink?
SNPs Plink2 duplication maf
updated 12 weeks ago by 11k • written 4 months ago by ▴ 30
0
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0
replies
202
views
GWAS() function error rrBLUP package for GWAS
R Rstudio rrBLUP GWAS
updated 6 months ago by 45k • written 6 months ago by ▴ 30
0
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1
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657
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Answer: Answer: Somatic Variant Calling from Nanopore Data
7 months ago by giulia.trauzzi ▴ 30
0
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0
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1.0k
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Comment: Comment: AWK for replacing the content of a column in a csv file with the content of anot
7 months ago by giulia.trauzzi ▴ 30
0
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0
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1.0k
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Comment: Comment: AWK for replacing the content of a column in a csv file with the content of anot
7 months ago by giulia.trauzzi ▴ 30
2
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4
replies
1.0k
views
AWK for replacing the content of a column in a csv file with the content of another column from another csv WITHOUT USING THE COLUMN NUMBER
bash awk csv
updated 7 months ago by 150k • written 7 months ago by ▴ 30
0
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0
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2.4k
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Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
8 months ago by giulia.trauzzi ▴ 30
0
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0
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2.4k
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Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
8 months ago by giulia.trauzzi ▴ 30
1
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0
replies
2.4k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
8 months ago by giulia.trauzzi ▴ 30
14
votes
15
replies
2.4k
views
How to give 2 input files (one from the process before and one from 3 processes before) in nextflow pipeline?
nextflow nf-core processes channels
updated 8 months ago by 7.4k • written 8 months ago by ▴ 30
0
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2
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2.4k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
8 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
2.4k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
8 months ago by giulia.trauzzi ▴ 30
1
vote
1
reply
2.4k
views
Comment: Comment: How to give 2 input files (one from the process before and one from 3 processes
8 months ago by giulia.trauzzi ▴ 30
0
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0
replies
2.0k
views
Comment: Comment: bcl-convert cannot create output directory structure at the path specified
8 months ago by giulia.trauzzi ▴ 30
2
votes
10
replies
2.0k
views
bcl-convert cannot create output directory structure at the path specified
illumina reads bcl-convert index demultiplexing
8 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
2.0k
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Comment: Comment: bcl-convert cannot create output directory structure at the path specified
10 months ago by giulia.trauzzi ▴ 30
0
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1
reply
2.0k
views
Comment: Comment: bcl-convert cannot create output directory structure at the path specified
10 months ago by giulia.trauzzi ▴ 30
0
votes
1
reply
2.0k
views
Comment: Comment: bcl-convert cannot create output directory structure at the path specified
10 months ago by giulia.trauzzi ▴ 30
0
votes
3
replies
2.4k
views
Running STRUCTURE from command line
STRUCTURE
updated 11 months ago by 45k • written 3.9 years ago by ▴ 30
0
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2
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1.9k
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Comment: Comment: Porechop output?
13 months ago by giulia.trauzzi ▴ 30
0
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0
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1.9k
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Comment: Comment: Porechop output?
13 months ago by giulia.trauzzi ▴ 30
5
votes
9
replies
1.9k
views
Porechop output?
porechop Nanopore
updated 13 months ago by 150k • written 13 months ago by ▴ 30
0
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1
reply
1.9k
views
Comment: Comment: Porechop output?
13 months ago by giulia.trauzzi ▴ 30
0
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0
replies
66k
views
Comment: Comment: Subsampling Bam File With Samtools
15 months ago by giulia.trauzzi ▴ 30
0
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1
reply
66k
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Comment: Comment: Subsampling Bam File With Samtools
15 months ago by giulia.trauzzi ▴ 30
0
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0
replies
1.6k
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Comment: Comment: Ipyrad de novo for variant calling
15 months ago by giulia.trauzzi ▴ 30
0
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0
replies
1.3k
views
Comment: Comment: Run metrics of Oxford Nanopore reads and visualisation of alignment
15 months ago by giulia.trauzzi ▴ 30
2
votes
2
replies
1.3k
views
Run metrics of Oxford Nanopore reads and visualisation of alignment
Nanopore alignment sequencing
15 months ago by giulia.trauzzi ▴ 30
1
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7
replies
6.0k
views
Plink1.9 error -chr not recognised
unix plink
updated 2.4 years ago by • 0 • written 3.9 years ago by ▴ 30
0
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3
replies
1.6k
views
Ipyrad de novo for variant calling
snps
15 months ago by giulia.trauzzi ▴ 30
0
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1
reply
6.0k
views
Comment: Comment: Plink1.9 error -chr not recognised
3.4 years ago by giulia.trauzzi ▴ 30
0
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1
reply
2.4k
views
Comment: Comment: Tajima'D and low-density SNP data
3.6 years ago by giulia.trauzzi ▴ 30
1
vote
0
replies
807
views
Why does STRUCTURE v2.3.4 (command line) does not work?
STRUCTURE SNPs bash
3.7 years ago by giulia.trauzzi ▴ 30
0
votes
4
replies
1.8k
views
Genepop for LD testing SNPs dataset
linkage genepop SNPs
updated 3.9 years ago by 11k • written 3.9 years ago by ▴ 30
0
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2
replies
1.8k
views
Comment: Comment: Genepop for LD testing SNPs dataset
3.9 years ago by giulia.trauzzi ▴ 30
0
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1
reply
6.0k
views
Comment: Comment: Plink1.9 error -chr not recognised
3.9 years ago by giulia.trauzzi ▴ 30
0
votes
1
reply
9.3k
views
Comment: C: Extremely low mapping rates with bowtie2
4.1 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
749
views
How many GBS derived reads pass filters after demultiplexing, adapter removal, trimming and filtering?
GBS SNP Stacks Cutadapt
4.1 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
752
views
Can I use FLEXBAR to detect and remove barcodes out of my short reads without demultiplexing ?
short reads Illumina barcodes removal FLEXBAR
4.2 years ago by giulia.trauzzi ▴ 30
0
votes
1
reply
1.0k
views
Trimming Illumina Seq with TRIMMOMATIC
trimmomatic GBS Illumina
4.2 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.5k
views
Comment: C: Merging .fq files per sample using a big loop - BASH?
4.2 years ago by giulia.trauzzi ▴ 30
3
votes
8
replies
1.5k
views
Merging .fq files per sample using a big loop - BASH?
fastq bash genomics
updated 2.1 years ago by 45k • written 4.2 years ago by ▴ 30
1
vote
2
replies
777
views
Mean sample depth?
depth SNP
4.2 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.3k
views
Pairwise Fst values derived from different algorithms?
Fst pairwise Fst population genetics statistics
4.2 years ago by giulia.trauzzi ▴ 30
0
votes
0
replies
1.1k
views
csv file format conversion to arp bash command line
bash population-genetics
updated 2.1 years ago by 45k • written 4.4 years ago by ▴ 30
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