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4
votes
14
replies
5.6k
views
Trouble with bedtools getfasta
bedtools
getfasta
written 2.8 years ago by
gkunz
▴ 30
0
votes
1
reply
514
views
Database for exploring genes regulated by a given transcription factor
Gene
Transcription-Factor
updated 17 months ago by
Ram
44k • written 22 months ago by
gkunz
▴ 30
0
votes
1
reply
541
views
Generating a novel sequence that does not align with a given genome (Scrabled LNA probe generation)
genomes
probes
misalignment
LNA
updated 2.1 years ago by
Matthias Zepper
5.0k • written 2.1 years ago by
gkunz
▴ 30
0
votes
1
reply
1.2k
views
Comment:
Comment: R tools for perform IDR analysis on more than 2 replicates?
2.2 years ago by
gkunz
▴ 30
0
votes
4
replies
1.2k
views
R tools for perform IDR analysis on more than 2 replicates?
R
IDR
ChIP-seq
updated 2.2 years ago by
ATpoint
85k • written 2.2 years ago by
gkunz
▴ 30
0
votes
0
replies
787
views
Comment:
Comment: Retreiving GOterms ID from the Term Description
2.6 years ago by
gkunz
▴ 30
2
votes
3
replies
787
views
Retreiving GOterms ID from the Term Description
terms
GO
2.6 years ago by
gkunz
▴ 30
0
votes
0
replies
366
views
Tools for associating enhancer sequences with target genes in non-model organisms
gene-association
enhancers
updated 17 months ago by
Ram
44k • written 2.7 years ago by
gkunz
▴ 30
0
votes
1
reply
1.6k
views
Comment:
Comment: Appropriately Establishing FIMO background
2.8 years ago by
gkunz
▴ 30
0
votes
5
replies
1.6k
views
Appropriately Establishing FIMO background
H3K27ac
FIMO
MEME-SUITE
IDENTIFICATION
MOTIF
updated 2.7 years ago by
Malcolm.Cook
★ 1.5k • written 2.8 years ago by
gkunz
▴ 30
0
votes
1
reply
1.6k
views
Comment:
Comment: Appropriately Establishing FIMO background
2.8 years ago by
gkunz
▴ 30
0
votes
1
reply
5.6k
views
Comment:
Comment: Trouble with bedtools getfasta
2.8 years ago by
gkunz
▴ 30
0
votes
0
replies
5.6k
views
Comment:
Comment: Trouble with bedtools getfasta
2.8 years ago by
gkunz
▴ 30
0
votes
0
replies
5.6k
views
Comment:
Comment: Trouble with bedtools getfasta
2.8 years ago by
gkunz
▴ 30
0
votes
1
reply
5.6k
views
Comment:
Comment: Trouble with bedtools getfasta
2.8 years ago by
gkunz
▴ 30
0
votes
0
replies
5.6k
views
Comment:
Comment: Trouble with bedtools getfasta
2.8 years ago by
gkunz
▴ 30
0
votes
0
replies
5.6k
views
Comment:
Comment: Trouble with bedtools getfasta
2.8 years ago by
gkunz
▴ 30
1
vote
6
replies
3.8k
views
Preparing ChIP-seq data for analysis with DESeq2
DESeq2
ChIP-seq
updated 2.9 years ago by
tom
• 0 • written 3.5 years ago by
gkunz
▴ 30
0
votes
0
replies
2.0k
views
Comment:
Comment: Generating a background file to be used by Homer for motif identification
3.5 years ago by
gkunz
▴ 30
0
votes
2
replies
2.0k
views
Generating a background file to be used by Homer for motif identification
homer
3.5 years ago by
gkunz
▴ 30
0
votes
1
reply
3.8k
views
Comment:
Comment: Preparing ChIP-seq data for analysis with DESeq2
3.5 years ago by
gkunz
▴ 30
1
vote
0
replies
3.8k
views
Comment:
Comment: Preparing ChIP-seq data for analysis with DESeq2
3.5 years ago by
gkunz
▴ 30
0
votes
0
replies
572
views
What size regions to use for motif Identification from differential H3K27ac peaks ?
H3K27ac
homer
motif
3.6 years ago by
gkunz
▴ 30
0
votes
0
replies
833
views
DiffBind3 outputs compared to previous versions
DiffBind3
R
ChIP-seq
EdgeR
Deseq2
3.6 years ago by
gkunz
▴ 30
3
votes
7
replies
2.0k
views
Can too high of a ChIPQC RiP% be indicative of insufficient stringency in peak calling?
R
ChIP-seq
ChIPQC
updated 3.6 years ago by
dariober
15k • written 3.6 years ago by
gkunz
▴ 30
0
votes
1
reply
2.0k
views
Comment:
Comment: Can too high of a ChIPQC RiP% be indicative of insufficient stringency in peak c
3.6 years ago by
gkunz
▴ 30
0
votes
0
replies
1.3k
views
Comment:
Comment: ChIPQC reporting fewer reads in bam than are actually present
3.6 years ago by
gkunz
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: ChIPQC reporting fewer reads in bam than are actually present
3.6 years ago by
gkunz
▴ 30
1
vote
4
replies
1.3k
views
ChIPQC reporting fewer reads in bam than are actually present
R
ChIPseq
ChIPQC
3.6 years ago by
gkunz
▴ 30
0
votes
0
replies
1.7k
views
Extracting background utilized by Homer for motif finding
homer
ChIP-Seq
3.9 years ago by
gkunz
▴ 30
0
votes
0
replies
1.0k
views
Loading Data Into TopGO with p.values
ChIP-Seq
topGO
4.0 years ago by
gkunz
▴ 30
1
vote
1
reply
1.5k
views
Comment:
C: Alternative/Incorrect DiffBind outputs for each contrast when providing entire v
4.2 years ago by
gkunz
▴ 30
3
votes
3
replies
1.5k
views
Alternative/Incorrect DiffBind outputs for each contrast when providing entire vs. partial datasheet
ChIP-Seq
software error
DiffBind
updated 4.2 years ago by
jared.andrews07
★ 18k • written 4.2 years ago by
gkunz
▴ 30
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