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4
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2.4k
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ConsensusClusterPlus: How to extract most contributing features for each cluster
R consensusclusterplus
updated 18 months ago by 4.9k • written 4.1 years ago by ★ 4.1k
26
votes
35
replies
35k
views
16 follow
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup
updated 2.2 years ago by ▴ 10 • written 11.1 years ago by ★ 4.1k
4
votes
7
replies
3.0k
views
TCGA library type information
tcga
updated 2.5 years ago by ★ 1.2k • written 3.9 years ago by ★ 4.1k
1
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1
reply
2.3k
views
Answer: Answer: Rshiny - ggplot - density plot
3.6 years ago by komal.rathi ★ 4.1k
3
votes
0
replies
4.7k
views
Answer: A: using hclust object from FactoMineR::HCPC to force clustering in pheatmap
4.7 years ago by komal.rathi ★ 4.1k
3
votes
3
replies
4.7k
views
using hclust object from FactoMineR::HCPC to force clustering in pheatmap
RNA-Seq factorminer PCA HCPC
4.7 years ago by komal.rathi ★ 4.1k
0
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0
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4.7k
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Comment: C: using hclust object from FactoMineR::HCPC to force clustering in pheatmap
4.7 years ago by komal.rathi ★ 4.1k
1
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0
replies
3.3k
views
Comment: C: Are there publicly available metagenomic RNA-Seq datasets?
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 4.1k
1
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1
reply
8.2k
views
Comment: C: Genomic Features - makeTranscriptDbFromGFF()
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 4.1k
1
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2
replies
8.2k
views
Answer: A: Genomic Features - makeTranscriptDbFromGFF()
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 4.1k
0
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0
replies
8.2k
views
Comment: C: Genomic Features - makeTranscriptDbFromGFF()
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 4.1k
0
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2
replies
7.6k
views
Comment: C: FastQC and EstimateLibrarySize (Picard): Library Complexity and/or Duplicated Re
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 4.1k
0
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0
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11k
views
Comment: C: Download all eQTL data for all the 9 tissues from GTEx Portal
updated 5.2 years ago by 45k • written 10.9 years ago by ★ 4.1k
0
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0
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7.7k
views
Comment: C: How does DESeq2 handle the read-counts assigned to special counters in HTSeq-cou
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 4.1k
4
votes
0
replies
8.0k
views
Answer: A: how to retrieve the nucleotide/base in a certain position using any programming
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 4.1k
0
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0
replies
7.1k
views
Comment: C: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
updated 5.3 years ago by 45k • written 9.4 years ago by ★ 4.1k
0
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1
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7.1k
views
Comment: C: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
updated 5.3 years ago by 45k • written 9.4 years ago by ★ 4.1k
1
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1
reply
3.0k
views
Answer: A: Gene lists from RNA Seq and Chip Seq
updated 5.4 years ago by 45k • written 10.5 years ago by ★ 4.1k
0
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0
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35k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 4.1k
0
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0
replies
10.0k
views
Comment: C: snakemake: pipeline failed with MissingOutputException
5.4 years ago by komal.rathi ★ 4.1k
43
votes
12
replies
41k
views
9 follow
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools
updated 3.4 years ago by 45k • written 11.9 years ago by ★ 4.1k
0
votes
0
replies
2.0k
views
Answer: A: How to create Gene_transcript association matrix with genome version hg19?
updated 5.5 years ago by 45k • written 10.3 years ago by ★ 4.1k
1
vote
1
reply
10k
views
Answer: Answer: Preparing a .genome file for snpEff
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 4.1k
0
votes
1
reply
13k
views
Comment: C: gtf file for htseq count
updated 5.5 years ago by 45k • written 10.4 years ago by ★ 4.1k
1
vote
0
replies
6.1k
views
Comment: C: 23andme: Convert Human Assembly Build 36 to Build 37
updated 5.5 years ago by 45k • written 10.4 years ago by ★ 4.1k
0
votes
1
reply
6.3k
views
Comment: C: HTSeq count (reverse count with paired-end data)
updated 5.5 years ago by 45k • written 10.8 years ago by ★ 4.1k
0
votes
0
replies
35k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.5 years ago by 45k • written 11.1 years ago by ★ 4.1k
0
votes
1
reply
35k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.5 years ago by 45k • written 11.0 years ago by ★ 4.1k
0
votes
0
replies
35k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.5 years ago by 45k • written 11.1 years ago by ★ 4.1k
0
votes
1
reply
35k
views
Comment: C: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 5.5 years ago by 45k • written 11.1 years ago by ★ 4.1k
0
votes
0
replies
4.3k
views
Comment: C: Count The Number Of A, T, G And C At Specific Genomic Locations For Multiple Rna
updated 5.5 years ago by 45k • written 11.1 years ago by ★ 4.1k
4
votes
9
replies
11k
views
Download all eQTL data for all the 9 tissues from GTEx Portal
GTEx-Portal eQTL
updated 3.2 years ago by 45k • written 10.9 years ago by ★ 4.1k
0
votes
0
replies
11k
views
Comment: C: Download all eQTL data for all the 9 tissues from GTEx Portal
5.5 years ago by komal.rathi ★ 4.1k
5
votes
0
replies
4.9k
views
Answer: A: How to get known canonical transcript information from UCSC for a specific genco
5.9 years ago by komal.rathi ★ 4.1k
6
votes
3
replies
4.9k
views
How to get known canonical transcript information from UCSC for a specific gencode version
gencode ucsc canonical transcripts
5.9 years ago by komal.rathi ★ 4.1k
1
vote
0
replies
4.9k
views
Comment: C: How to get known canonical transcript information from UCSC for a specific genco
5.9 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
6.7k
views
Comment: C: GATK ASEReadCounter: Downstream analysis for identifying allele specific express
6.2 years ago by komal.rathi ★ 4.1k
6
votes
4
replies
6.7k
views
GATK ASEReadCounter: Downstream analysis for identifying allele specific expression
RNA-Seq allele-specific expression
updated 6.2 years ago by 6.6k • written 7.7 years ago by ★ 4.1k
0
votes
1
reply
4.5k
views
Comment: C: RSEM output interpretation
6.4 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
1.9k
views
Comment: C: How to determine RNA-seq samples from dbGaP metadata
6.6 years ago by komal.rathi ★ 4.1k
0
votes
3
replies
1.9k
views
How to determine RNA-seq samples from dbGaP metadata
dbgap metadata
updated 6.6 years ago by 5.8k • written 6.6 years ago by ★ 4.1k
6
votes
6
replies
4.6k
views
Rnaseq Library Quantification
rnaseq library
updated 7.1 years ago by 35k • written 11.5 years ago by ★ 4.1k
23
votes
8
replies
31k
views
R DESeq: What exactly is Variance Stabilizating Transformation?
R DESeq VST
updated 3.3 years ago by 45k • written 10.7 years ago by ★ 4.1k
0
votes
0
replies
2.8k
views
Comment: C: Why does GFF prepared using dexseq_prepare_annotation shows different exon numbe
7.5 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
4.9k
views
Comment: C: exon level quantification using htseq count
7.5 years ago by komal.rathi ★ 4.1k
8
votes
2
replies
2.8k
views
Why does GFF prepared using dexseq_prepare_annotation shows different exon number than UCSC genome browser
dexseq_prepare_annotation dexseq exons
updated 7.5 years ago by 105k • written 7.5 years ago by ★ 4.1k
0
votes
0
replies
2.5k
views
Comment: C: Filter bam files using a bed file: Why is the mate missing?
7.5 years ago by komal.rathi ★ 4.1k
1
vote
2
replies
2.5k
views
Filter bam files using a bed file: Why is the mate missing?
RNA-Seq Samtools
7.5 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
4.9k
views
Comment: C: exon level quantification using htseq count
7.5 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
4.9k
views
Comment: C: exon level quantification using htseq count
7.5 years ago by komal.rathi ★ 4.1k
413 results • Page 1 of 9
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