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2
votes
5
replies
4.8k
views
exon level quantification using htseq count
htseq-count RNA-Seq exon quantifications
updated 7.4 years ago by 105k • written 7.4 years ago by ★ 4.1k
0
votes
3
replies
4.5k
views
RSEM output interpretation
rsem
7.5 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
9.3k
views
Comment: C: htseq-count cannot find pysam
7.5 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
5.1k
views
Comment: C: How do I obtain germline mutation for TCGA samples?
7.6 years ago by komal.rathi ★ 4.1k
0
votes
6
replies
3.6k
views
IGV color interpretation by insert size
igv
updated 7.6 years ago by 102k • written 7.6 years ago by ★ 4.1k
0
votes
1
reply
3.6k
views
Comment: C: IGV color interpretation by insert size
7.6 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
3.6k
views
Comment: C: IGV color interpretation by insert size
7.6 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
3.1k
views
Comment: C: Detection of fusion events of Retrotransposons and genes/lncRNA from RNA-seq dat
7.6 years ago by komal.rathi ★ 4.1k
1
vote
0
replies
2.4k
views
Job: Bioinformatics Scientist I, Childrens Hospital of Philadelphia, Philadelphia, PA, USA
hpc wgs wes next-gen rna-seq
updated 21 months ago by 44k • written 7.7 years ago by ★ 4.1k
6
votes
1
reply
4.5k
views
Answer: A: Normalization of RNASeq read counts without conditions
7.7 years ago by komal.rathi ★ 4.1k
0
votes
6
replies
2.3k
views
Is it possible/recommended to trim RNA-Seq reads to a specific length
trim RNA-Seq chimeraScan STAR-Fusion
updated 7.7 years ago by 20 • written 7.9 years ago by ★ 4.1k
0
votes
1
reply
3.6k
views
Comment: C: How to create an AffyBatch object using a data matrix?
7.9 years ago by komal.rathi ★ 4.1k
1
vote
3
replies
3.6k
views
How to create an AffyBatch object using a data matrix?
affy affyBatch matrix
7.9 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
2.0k
views
Comment: C: RNASeq differential expression: How to deal with few genes with extremely high e
7.9 years ago by komal.rathi ★ 4.1k
4
votes
2
replies
2.0k
views
RNASeq differential expression: How to deal with few genes with extremely high expression levels
RNA-Seq mtDNA limma voom
updated 7.9 years ago by 8.9k • written 7.9 years ago by ★ 4.1k
0
votes
0
replies
2.3k
views
Comment: C: Is it possible/recommended to trim RNA-Seq reads to a specific length
7.9 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
2.3k
views
Comment: C: Is it possible/recommended to trim RNA-Seq reads to a specific length
7.9 years ago by komal.rathi ★ 4.1k
1
vote
2
replies
1.7k
views
TCGA disease subtype information
tcga
updated 8.0 years ago by 7.6k • written 8.0 years ago by ★ 4.1k
1
vote
0
replies
1.7k
views
Answer: A: TCGA disease subtype information
8.0 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
104k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
8.2 years ago by komal.rathi ★ 4.1k
5
votes
8
replies
3.1k
views
Visualizing hg19 and hg38 FPKMs in a single plot
RNA-Seq
updated 8.3 years ago by 11k • written 8.3 years ago by ★ 4.1k
0
votes
1
reply
3.1k
views
Comment: C: Visualizing hg19 and hg38 FPKMs in a single plot
8.3 years ago by komal.rathi ★ 4.1k
0
votes
1
reply
3.1k
views
Comment: C: Visualizing hg19 and hg38 FPKMs in a single plot
8.3 years ago by komal.rathi ★ 4.1k
3
votes
2
replies
2.2k
views
TARGET Pediatric Cancer Code Table
TARGET Code
8.3 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
2.2k
views
Comment: C: TARGET Pediatric Cancer Code Table
8.3 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
2.6k
views
CRLMM: Which array type work with which annotation package
crlmm
8.4 years ago by komal.rathi ★ 4.1k
6
votes
0
replies
3.6k
views
Answer: A: Hi-C analysis and significant interactions
8.4 years ago by komal.rathi ★ 4.1k
1
vote
0
replies
3.9k
views
Comment: C: changing gtf file manually
8.4 years ago by komal.rathi ★ 4.1k
1
vote
1
reply
3.9k
views
Answer: A: changing gtf file manually
8.4 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
3.0k
views
Comment: C: Convert specific regions in bam file to vcf and annotating the vcf
8.5 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
3.0k
views
Comment: C: Convert specific regions in bam file to vcf and annotating the vcf
8.5 years ago by komal.rathi ★ 4.1k
4
votes
5
replies
3.0k
views
Convert specific regions in bam file to vcf and annotating the vcf
exome sequencing bam vcf subset
8.5 years ago by komal.rathi ★ 4.1k
30
votes
23
replies
33k
views
10 follow
TCGA: Does TCGA cancer studies have mRNA expression data for Control/Normal samples?
RSEM controls TCGA normals RNASeq
updated 3.8 years ago by 44k • written 10.6 years ago by ★ 4.1k
1
vote
2
replies
2.3k
views
Some Ways To Analyze Picard Estimatelibrarycomplexity Results
picard
updated 8.6 years ago by 20 • written 11.3 years ago by ★ 4.1k
0
votes
0
replies
2.5k
views
Comment: C: Identify genes with extracellular matrix domains
8.6 years ago by komal.rathi ★ 4.1k
5
votes
2
replies
3.0k
views
Batch query obsolete gene names to get current HGNC symbol
gene symbols obsolete biomart genecards
8.7 years ago by komal.rathi ★ 4.1k
3
votes
1
reply
3.0k
views
Answer: A: Batch query obsolete gene names to get current HGNC symbol
8.7 years ago by komal.rathi ★ 4.1k
5
votes
6
replies
3.9k
views
Can't access DAVID
DAVID
updated 2.2 years ago by 44k • written 9.6 years ago by ★ 4.1k
0
votes
1
reply
2.5k
views
Comment: C: Identify genes with extracellular matrix domains
8.7 years ago by komal.rathi ★ 4.1k
0
votes
6
replies
2.5k
views
Identify genes with extracellular matrix domains
protein domain compartments extracellular matrix
updated 8.7 years ago by 18k • written 8.7 years ago by ★ 4.1k
0
votes
1
reply
2.5k
views
Comment: C: Identify genes that have domains sticking out in the extracellular matrix
8.7 years ago by komal.rathi ★ 4.1k
0
votes
0
replies
8.8k
views
Comment: C: Affymetrix probeset IDs...
8.7 years ago by komal.rathi ★ 4.1k
1
vote
0
replies
3.2k
views
Comment: C: HTSeq result, most genes have 0 count?
8.7 years ago by komal.rathi ★ 4.1k
30
votes
8
replies
59k
views
7 follow
R: How to convert log2FC (Fold Change) obtained by limma's topTable() function to FC
limma microarray topTable R
updated 2.6 years ago by 44k • written 10.8 years ago by ★ 4.1k
0
votes
1
reply
4.5k
views
Comment: C: How to sort fastq.gz files efficiently
8.9 years ago by komal.rathi ★ 4.1k
1
vote
3
replies
4.5k
views
How to sort fastq.gz files efficiently
fastq sort
updated 23 months ago by 44k • written 8.9 years ago by ★ 4.1k
5
votes
3
replies
7.1k
views
HISAT (Transcript Alignment) and StringTie (Transcript Assembly)
RNA-Seq HISAT StringTie
updated 2.6 years ago by 44k • written 10.4 years ago by ★ 4.1k
0
votes
1
reply
2.5k
views
Comment: C: Bioinformatics Scientist II, Electric Boogaloo. Philadelphia, PA
9.2 years ago by komal.rathi ★ 4.1k
6
votes
8
replies
7.0k
views
DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
voom RNA-Seq spike-in deseq limma
updated 2.5 years ago by 44k • written 9.2 years ago by ★ 4.1k
3
votes
3
replies
9.7k
views
How to add tss_id and p_id in an Ensembl GTF (or any GTF other than that generated by cufflinks)
cuffcompare
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.1k
413 results • Page 2 of 9
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