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Comment: Comment: Analysing Problem Seen In MEGA X
3.1 years ago by cg1440 ▴ 60
13
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3
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4.8k
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samtools/bcftools mpileup -B option: to use it or not in order to reduce the occurence of false SNPs discovery?
covid-19 mpileup bcftools snp samtools
3.9 years ago by cg1440 ▴ 60
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3.0k
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Comment: Comment: Excluding variants with a "LowQual" filter in bcftools consensus
4.0 years ago by cg1440 ▴ 60
0
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0
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3.0k
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Comment: Comment: Excluding variants with a "LowQual" filter in bcftools consensus
4.0 years ago by cg1440 ▴ 60
3
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4
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3.0k
views
Excluding variants with a "LowQual" filter in bcftools consensus
snp bcftools covid-19 ngs
4.0 years ago by cg1440 ▴ 60
3
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3
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2.6k
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Effect of removing secondary/supplementary alignments from BAM file?
ngs covid-19 SNP
4.0 years ago by cg1440 ▴ 60
0
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1
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2.6k
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Comment: C: Effect of removing secondary/supplementary alignments from BAM file?
4.0 years ago by cg1440 ▴ 60
0
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1
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3.3k
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Comment: C: FASTQC - Good "Per Base Sequence Quality" but Bad "Per Tile Sequence Quality"?
4.1 years ago by cg1440 ▴ 60
0
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3
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3.3k
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FASTQC - Good "Per Base Sequence Quality" but Bad "Per Tile Sequence Quality"?
fastqc covid-19 ngs
4.1 years ago by cg1440 ▴ 60
0
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1
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2.4k
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Comment: C: Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in
4.3 years ago by cg1440 ▴ 60
3
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3
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2.4k
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Is it normal to obtain a perfectly dark blue "Per tile sequence quality" plot in fastqc?
fastqc ngs
updated 4.3 years ago by 105k • written 4.3 years ago by ▴ 60
0
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1
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19k
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Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
4.3 years ago by cg1440 ▴ 60
0
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1
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19k
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Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
4.3 years ago by cg1440 ▴ 60
0
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1
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19k
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Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
4.3 years ago by cg1440 ▴ 60
3
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13
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19k
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Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
trimmomatic fastqc NGS
updated 4.3 years ago by 9.0k • written 4.3 years ago by ▴ 60
0
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0
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19k
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Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
4.3 years ago by cg1440 ▴ 60
0
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1
reply
19k
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Comment: C: Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
4.3 years ago by cg1440 ▴ 60
0
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0
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949
views
Comment: C: Does the order of the samples matter in the design matrix? (paired samples - lim
4.5 years ago by cg1440 ▴ 60
1
vote
2
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949
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Does the order of the samples matter in the design matrix? (paired samples - limma package)
limma linear model microarray
4.5 years ago by cg1440 ▴ 60
0
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0
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903
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Why does oligo::getProbeInfo() give a lower number of probes than the actual number of probes on Affymetrix Human Gene 1.0 ST Array ?
R affymetrix oligo
4.5 years ago by cg1440 ▴ 60
2
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0
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819
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What is the difference between probeNames() and probesetNames() functions in the oligo package?
R oligo Affymetrix
4.5 years ago by cg1440 ▴ 60
0
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0
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1.8k
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Comment: C: [Affymetrix mixroarray] How to group together the probes related to the same gen
4.5 years ago by cg1440 ▴ 60
0
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1
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1.8k
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Comment: C: [Affymetrix mixroarray] How to group together the probes related to the same gen
4.5 years ago by cg1440 ▴ 60
0
votes
4
replies
1.8k
views
[Affymetrix mixroarray] How to group together the probes related to the same gene?
R Microarray Affymetrix
updated 4.5 years ago by 89k • written 4.5 years ago by ▴ 60
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