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2
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0
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7.5k
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Answer: A: Reading gene expression data from an Excel spreadsheet into a python dictionary
updated 4.9 years ago by 44k • written 10.6 years ago by ▴ 350
0
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0
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5.4k
views
Comment: C: Which tool to use to run a PCA on a microarray dataset to select the most releva
updated 4.9 years ago by 44k • written 10.6 years ago by ▴ 350
1
vote
2
replies
1.7k
views
Is cnvkit coverage output split into non-overlapping segments?
cnvkit coverage exome
updated 7.1 years ago by ★ 2.8k • written 7.1 years ago by ▴ 350
1
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0
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1.7k
views
Answer: A: Is cnvkit coverage output split into non-overlapping segments?
7.1 years ago by fbrundu ▴ 350
1
vote
1
reply
13k
views
Comment: C: Compute mean depth coverage for exome data with paired end, overlapping, feature
7.1 years ago by fbrundu ▴ 350
22
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14
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13k
views
6 follow
Compute mean depth coverage for exome data with paired end, overlapping, features
coverage bam depth exome
updated 2.1 years ago by ▴ 80 • written 7.1 years ago by ▴ 350
0
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1
reply
13k
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Comment: C: Compute mean depth coverage for exome data with paired end, overlapping, feature
7.1 years ago by fbrundu ▴ 350
0
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0
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2.0k
views
TruSeq Exome Kit bed file old version
bed whole-exome-sequencing
updated 20 months ago by 44k • written 7.1 years ago by ▴ 350
1
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0
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2.5k
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Comment: C: CNVkit calling strategies with matched-normal tumor
7.1 years ago by fbrundu ▴ 350
0
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1
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2.5k
views
Comment: C: CNVkit calling strategies with matched-normal tumor
7.1 years ago by fbrundu ▴ 350
3
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4
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2.5k
views
CNVkit calling strategies with matched-normal tumor
cnvkit copy-number-variation whole-exome
updated 7.1 years ago by 88k • written 7.1 years ago by ▴ 350
1
vote
1
reply
2.2k
views
What is the control level of activation in Paradigm?
paradigm gene-expression pathway mrna
updated 3.2 years ago by 44k • written 9.7 years ago by ▴ 350
7
votes
6
replies
9.7k
views
6 follow
How To Merge Two Microarrays Datasets?
microarray merge dataset
updated 2.1 years ago by 44k • written 11.5 years ago by ▴ 350
0
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0
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2.1k
views
Which data format for mRNA expression matrix is necessary to run pathway analysis with Paradigm?
gene-expression pathway paradigm mrna
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 350
3
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1
reply
2.5k
views
How to aggregate multiple copy number variation profiles or select the best one for one sample
copy-number-variation tcga RNA-Seq
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 350
0
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0
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4.8k
views
Comment: Comment: How to select genes before log2 ratio on a RNASeq gene expression matrix, based
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 350
0
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0
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4.8k
views
Comment: Comment: How to select genes before log2 ratio on a RNASeq gene expression matrix, based
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 350
0
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1
reply
4.8k
views
Comment: Comment: How to select genes before log2 ratio on a RNASeq gene expression matrix, based
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 350
6
votes
7
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4.8k
views
How to select genes before log2 ratio on a RNASeq gene expression matrix, based on signal median
log-ratio expression RNA-Seq feature-selection
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 350
0
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1
reply
20k
views
Comment: C: How to download a full matrix of gene expression of a TCGA dataset
10.5 years ago by fbrundu ▴ 350
10
votes
6
replies
20k
views
How to download a full matrix of gene expression of a TCGA dataset
tcga gene expression cancer samples
updated 10.5 years ago by ▴ 520 • written 10.5 years ago by ▴ 350
2
votes
1
reply
4.7k
views
Is LOESS normalization done to each sample independently?
loess normalization microarray regression
updated 10.5 years ago by 4.1k • written 10.5 years ago by ▴ 350
0
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0
replies
4.2k
views
Comment: C: How to test the robustness and the performance of a novel classification algorit
10.5 years ago by fbrundu ▴ 350
4
votes
9
replies
4.2k
views
How to test the robustness and the performance of a novel classification algorithm for gene expression data
algorithm robustness performance test
updated 10.5 years ago by ★ 3.1k • written 10.5 years ago by ▴ 350
0
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1
reply
4.2k
views
Comment: C: How to test the robustness and the performance of a novel classification algorit
10.5 years ago by fbrundu ▴ 350
0
votes
1
reply
4.2k
views
Comment: C: How to test the robustness and the performance of a novel classification algorit
10.5 years ago by fbrundu ▴ 350
0
votes
0
replies
4.2k
views
Comment: C: How to test the robustness and the performance of a novel classification algorit
10.5 years ago by fbrundu ▴ 350
0
votes
1
reply
1.5k
views
Have pathways a minimal significative size?
pathway
updated 20 months ago by 44k • written 10.6 years ago by ▴ 350
0
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2
replies
2.8k
views
Comment: C: Are Gene Symbols case sensitive or insensitive?
10.6 years ago by fbrundu ▴ 350
9
votes
5
replies
2.8k
views
Are Gene Symbols case sensitive or insensitive?
symbol gene
updated 3.2 years ago by 44k • written 10.6 years ago by ▴ 350
0
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0
replies
5.4k
views
Comment: C: Which tool to use to run a PCA on a microarray dataset to select the most releva
10.6 years ago by fbrundu ▴ 350
0
votes
0
replies
5.4k
views
Comment: C: Which tool to use to run a PCA on a microarray dataset to select the most releva
10.6 years ago by fbrundu ▴ 350
0
votes
0
replies
5.4k
views
Comment: C: Which tool to use to run a PCA on a microarray dataset to select the most releva
10.6 years ago by fbrundu ▴ 350
10
votes
6
replies
5.4k
views
Which tool to use to run a PCA on a microarray dataset to select the most relevant features (preferably in Python)
pca python microarray r features
updated 3.2 years ago by 44k • written 10.6 years ago by ▴ 350
29
votes
10
replies
52k
views
How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
fastq paired-end illumina
updated 10.7 years ago by ★ 2.2k • written 10.7 years ago by ▴ 350
0
votes
1
reply
52k
views
Comment: C: How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
10.7 years ago by fbrundu ▴ 350
0
votes
1
reply
52k
views
Comment: C: How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
10.7 years ago by fbrundu ▴ 350
0
votes
1
reply
52k
views
Comment: C: How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
10.7 years ago by fbrundu ▴ 350
0
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0
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52k
views
Comment: C: How To Check If Illumina Fastq Is Single Or Paired End With Minimal Sequence Id
10.7 years ago by fbrundu ▴ 350
0
votes
0
replies
5.1k
views
Answer: A: How To Find Gene - Probe Mapping For A Specific Affymetrix Platform
10.8 years ago by fbrundu ▴ 350
0
votes
1
reply
5.1k
views
How To Find Gene - Probe Mapping For A Specific Affymetrix Platform
affymetrix gene mapping
11.0 years ago by fbrundu ▴ 350
1
vote
1
reply
3.4k
views
At Which Step Apply A Detection Filter When Preprocessing Microarray Data? (Before/After Normalization, Batch Effects Removal)
filter normalization microarray
updated 11.1 years ago by 27k • written 11.1 years ago by ▴ 350
8
votes
1
reply
11k
views
In Which Order Use Normalization And Batch Effects Removal?
normalization microarray
updated 11.1 years ago by 27k • written 11.1 years ago by ▴ 350
3
votes
3
replies
3.2k
views
For Which Reason Is Useful To Do Gene Wise Normalization In Microarray Matrices?
microarray normalization gene
updated 11.1 years ago by 8.3k • written 11.1 years ago by ▴ 350
3
votes
2
replies
5.5k
views
In Which Type Of Data Does Combat Best Perform?
microarray
11.1 years ago by fbrundu ▴ 350
1
vote
1
reply
3.1k
views
Negative Value On Linear Gene Expression In Microarrays
microarray illumina gene-expression
updated 11.1 years ago by 27k • written 11.1 years ago by ▴ 350
0
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0
replies
3.6k
views
Comment: C: Warning Using Dwd Matlab Package And Results Matrix Not Fully Non Negative
11.4 years ago by fbrundu ▴ 350
0
votes
1
reply
3.6k
views
Comment: C: Warning Using Dwd Matlab Package And Results Matrix Not Fully Non Negative
11.4 years ago by fbrundu ▴ 350
0
votes
1
reply
3.6k
views
Comment: C: Warning Using Dwd Matlab Package And Results Matrix Not Fully Non Negative
11.4 years ago by fbrundu ▴ 350
1
vote
5
replies
3.6k
views
Warning Using Dwd Matlab Package And Results Matrix Not Fully Non Negative
microarray matlab
updated 11.4 years ago by ▴ 330 • written 11.4 years ago by ▴ 350
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