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3
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281
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Tutorial: How to calculate partial correlation controlling cancer types
CRISPR biology correlation computational bioinformatics
6 days ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
415
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Tutorial: PCA analysis on TCGA bulk RNAseq data
R RNAseq TCGA
4 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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1.1k
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Answer: Answer: Error from Using FindVariableFeatures Function in Seurat Package
updated 4 months ago by 152k • written 4 months ago by ★ 4.7k
0
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0
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622
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Comment: Comment: Understanding how to deal with Brain snRNA-seq data
5 months ago by Ming Tommy Tang ★ 4.7k
6
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0
replies
564
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Tutorial: Step by step tutorial to replicate a genomics figure
R Unix ChIP-seq bioconductor
5 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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643
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Answer: Answer: Integrating TCGA tumor RNAseq data with normal tissue samples from other sources
7 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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630
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Answer: Answer: Differential binding analysis between different TFs
7 months ago by Ming Tommy Tang ★ 4.7k
2
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1
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773
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Comment: Comment: Selecting DEGs for gene ontology using clusterprofiler and DESeq2
7 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
394
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Tutorial: How CCA alignment and cell label transfer work in Seurat
biology computational seurat bioinformatics scRNAseq
7 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
1.9k
views
Comment: Comment: How to determine whether it is 10x data
7 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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1.1k
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Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
8 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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1.3k
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Answer: Answer: GEOquery issue
8 months ago by Ming Tommy Tang ★ 4.7k
3
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0
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361
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Blog: How Seurat PCA projection, KNN and MNN for label transfer work
R RNA-seq scRNA-seq PCA
updated 8 months ago by 45k • written 8 months ago by ★ 4.7k
0
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1
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624
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Answer: Answer: How methylation is annotated, and what is the number behind the cg.... annotatio
8 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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566
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Comment: Comment: Multi OMICS analysis
8 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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1.6k
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Comment: Comment: Permutations FGSEA
8 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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800
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Comment: Comment: Cluster regions based on similar/dissimilar ChIP-seq signal profile across the w
8 months ago by Ming Tommy Tang ★ 4.7k
2
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1
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845
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Answer: Answer: What is wrong with my scripts?
8 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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1.0k
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Comment: Comment: Using DNA Methylation Data as Input for ChromHMM
8 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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896
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Comment: Comment: NA Values Appearing After Log Transformation of array Data
9 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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988
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Comment: Comment: GSEA single cell
9 months ago by Ming Tommy Tang ★ 4.7k
1
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1
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896
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Answer: Answer: NA Values Appearing After Log Transformation of array Data
9 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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847
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Comment: Comment: Extracting normalized counts from RDS (Seurat) file
9 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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614
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Answer: Answer: Pathway analysis for mouse gene sets
9 months ago by Ming Tommy Tang ★ 4.7k
2
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1
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766
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Answer: Answer: How can I get the list of all human ensembl transcript ids?
9 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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1.6k
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Comment: Comment: which bed file should be used for deeptools computeMatrix
10 months ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
926
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Tutorial: How to install R and Rstudio on macOS with M3 chip
rstats computational-biology
updated 10 months ago by 45k • written 10 months ago by ★ 4.7k
0
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0
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2.6k
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Comment: Comment: why R scripts are preferred to biopython for RNA-Seq analyses?
10 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.4k
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Comment: Comment: Parallel processing of bioinformatics pipeline - running deepbgc, bagel, and ant
10 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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657
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Answer: Answer: Unable to Upload a .txt file into GSEA
10 months ago by Ming Tommy Tang ★ 4.7k
6
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0
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962
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Tutorial: 6 tips to stay up to date for bioinformatics
bioinformatics computational-biology
updated 10 months ago by 45k • written 10 months ago by ★ 4.7k
3
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0
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567
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Tutorial: Tutorial: How to configure terminal on macOS for bioinformatics
terminal macOS unix
updated 10 months ago by 45k • written 10 months ago by ★ 4.7k
5
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0
replies
963
views
Tutorial: 10 books got me started on bioinformatics
bioinformatics computational-biology
updated 10 months ago by 45k • written 10 months ago by ★ 4.7k
1
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0
replies
838
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Comment: Comment: Tools for estimating telomere length
10 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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1.4k
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Comment: Comment: Pseudobulk for scRNA-seq: sum or mean?
10 months ago by Ming Tommy Tang ★ 4.7k
0
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0
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895
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Answer: Answer: How can we identify if there are neighboring genes or overlapping promoter regio
10 months ago by Ming Tommy Tang ★ 4.7k
2
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0
replies
853
views
Answer: Answer: temp directory as output in snakemake
10 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
1.3k
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Comment: Comment: Seeking Tutorial for Downloading TCGA Data with TCGAbiolinks and Converting to T
12 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
1.7k
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Comment: Comment: Creating GCT files
12 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
563
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Comment: Comment: ChIP-seq SICER
12 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
7.6k
views
Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
updated 12 months ago by 45k • written 12 months ago by ★ 4.7k
0
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0
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1.7k
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Comment: Comment: Slot to pull data from for DoHeatmap
12 months ago by Ming Tommy Tang ★ 4.7k
1
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0
replies
1.0k
views
Answer: Answer: Example human WGS fastq data
12 months ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
1.5k
views
Answer: Answer: Download SRR by parallele and fastq dump with a wired problem
12 months ago by Ming Tommy Tang ★ 4.7k
1
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0
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2.2k
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Comment: Comment: Alignment tool for very short reads (25bp)
12 months ago by Ming Tommy Tang ★ 4.7k
2
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0
replies
615
views
Tutorial: Seurat Object Explained: Beginner's Guide and Demo
scRNA-seq Seurat single-cell
updated 12 months ago by 45k • written 12 months ago by ★ 4.7k
2
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0
replies
1.5k
views
Answer: Answer: GSEA with fgsea package and using stat from DESeq2 output - what to do with NA p
12 months ago by Ming Tommy Tang ★ 4.7k
0
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0
replies
692
views
Comment: Comment: How to find column names for ENCODE ATAC-seq data?
12 months ago by Ming Tommy Tang ★ 4.7k
6
votes
1
reply
928
views
Tutorial: How to organize a computational biology project
file-organization
updated 12 months ago by ★ 29k • written 12 months ago by ★ 4.7k
2
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1
reply
1.1k
views
Comment: Comment: chIP-seq vs ATACseq analysis
12 months ago by Ming Tommy Tang ★ 4.7k
477 results • Page 1 of 10
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