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Answer: Answer: Integrating TCGA tumor RNAseq data with normal tissue samples from other sources
6 weeks ago by Ming Tommy Tang ★ 4.5k
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0
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389
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Answer: Answer: Differential binding analysis between different TFs
9 weeks ago by Ming Tommy Tang ★ 4.5k
2
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1
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504
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Comment: Comment: Selecting DEGs for gene ontology using clusterprofiler and DESeq2
9 weeks ago by Ming Tommy Tang ★ 4.5k
1
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0
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208
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Tutorial: How CCA alignment and cell label transfer work in Seurat
biology computational seurat bioinformatics scRNAseq
9 weeks ago by Ming Tommy Tang ★ 4.5k
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0
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1.2k
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Comment: Comment: How to determine whether it is 10x data
10 weeks ago by Ming Tommy Tang ★ 4.5k
1
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1
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609
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Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
10 weeks ago by Ming Tommy Tang ★ 4.5k
1
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1
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663
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Answer: Answer: GEOquery issue
10 weeks ago by Ming Tommy Tang ★ 4.5k
3
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0
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195
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Blog: How Seurat PCA projection, KNN and MNN for label transfer work
R RNA-seq scRNA-seq PCA
updated 10 weeks ago by 44k • written 10 weeks ago by ★ 4.5k
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1
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344
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Answer: Answer: How methylation is annotated, and what is the number behind the cg.... annotatio
11 weeks ago by Ming Tommy Tang ★ 4.5k
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0
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341
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Comment: Comment: Multi OMICS analysis
11 weeks ago by Ming Tommy Tang ★ 4.5k
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0
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831
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Comment: Comment: Permutations FGSEA
11 weeks ago by Ming Tommy Tang ★ 4.5k
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0
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451
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Comment: Comment: Cluster regions based on similar/dissimilar ChIP-seq signal profile across the w
11 weeks ago by Ming Tommy Tang ★ 4.5k
2
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1
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464
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Answer: Answer: What is wrong with my scripts?
11 weeks ago by Ming Tommy Tang ★ 4.5k
1
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1
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597
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Comment: Comment: Using DNA Methylation Data as Input for ChromHMM
12 weeks ago by Ming Tommy Tang ★ 4.5k
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0
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527
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Comment: Comment: NA Values Appearing After Log Transformation of array Data
4 months ago by Ming Tommy Tang ★ 4.5k
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0
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552
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Comment: Comment: GSEA single cell
4 months ago by Ming Tommy Tang ★ 4.5k
1
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1
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527
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Answer: Answer: NA Values Appearing After Log Transformation of array Data
4 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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387
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Comment: Comment: Extracting normalized counts from RDS (Seurat) file
4 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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375
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Answer: Answer: Pathway analysis for mouse gene sets
4 months ago by Ming Tommy Tang ★ 4.5k
2
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1
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406
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Answer: Answer: How can I get the list of all human ensembl transcript ids?
4 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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788
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Comment: Comment: which bed file should be used for deeptools computeMatrix
4 months ago by Ming Tommy Tang ★ 4.5k
0
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1
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492
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Tutorial: How to install R and Rstudio on macOS with M3 chip
rstats computational-biology
updated 4 months ago by 44k • written 4 months ago by ★ 4.5k
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0
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1.2k
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Comment: Comment: why R scripts are preferred to biopython for RNA-Seq analyses?
4 months ago by Ming Tommy Tang ★ 4.5k
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0
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1.8k
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Comment: Comment: Parallel processing of bioinformatics pipeline - running deepbgc, bagel, and ant
4 months ago by Ming Tommy Tang ★ 4.5k
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0
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375
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Answer: Answer: Unable to Upload a .txt file into GSEA
5 months ago by Ming Tommy Tang ★ 4.5k
3
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0
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631
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Tutorial: 6 tips to stay up to date for bioinformatics
bioinformatics computational-biology
updated 5 months ago by 44k • written 5 months ago by ★ 4.5k
3
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0
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336
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Tutorial: Tutorial: How to configure terminal on macOS for bioinformatics
terminal macOS unix
updated 5 months ago by 44k • written 5 months ago by ★ 4.5k
5
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0
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641
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Tutorial: 10 books got me started on bioinformatics
bioinformatics computational-biology
updated 5 months ago by 44k • written 5 months ago by ★ 4.5k
1
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0
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508
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Comment: Comment: Tools for estimating telomere length
5 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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639
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Comment: Comment: Pseudobulk for scRNA-seq: sum or mean?
5 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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635
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Answer: Answer: How can we identify if there are neighboring genes or overlapping promoter regio
5 months ago by Ming Tommy Tang ★ 4.5k
2
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0
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492
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Answer: Answer: temp directory as output in snakemake
5 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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565
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Comment: Comment: Seeking Tutorial for Downloading TCGA Data with TCGAbiolinks and Converting to T
6 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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931
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Comment: Comment: Creating GCT files
6 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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333
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Comment: Comment: ChIP-seq SICER
6 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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5.8k
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Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
updated 6 months ago by 44k • written 6 months ago by ★ 4.5k
0
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0
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930
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Comment: Comment: Slot to pull data from for DoHeatmap
6 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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580
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Answer: Answer: Example human WGS fastq data
6 months ago by Ming Tommy Tang ★ 4.5k
0
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1
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943
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Answer: Answer: Download SRR by parallele and fastq dump with a wired problem
6 months ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
1.1k
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Comment: Comment: Alignment tool for very short reads (25bp)
6 months ago by Ming Tommy Tang ★ 4.5k
2
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0
replies
400
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Tutorial: Seurat Object Explained: Beginner's Guide and Demo
scRNA-seq Seurat single-cell
updated 6 months ago by 44k • written 6 months ago by ★ 4.5k
2
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0
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868
views
Answer: Answer: GSEA with fgsea package and using stat from DESeq2 output - what to do with NA p
6 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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419
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Comment: Comment: How to find column names for ENCODE ATAC-seq data?
6 months ago by Ming Tommy Tang ★ 4.5k
6
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1
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645
views
Tutorial: How to organize a computational biology project
file-organization
updated 6 months ago by ★ 28k • written 6 months ago by ★ 4.5k
2
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1
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657
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Comment: Comment: chIP-seq vs ATACseq analysis
6 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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698
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Comment: Comment: Making heatmaps of ATACseq annotation data in R?
6 months ago by Ming Tommy Tang ★ 4.5k
0
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0
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647
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Comment: Comment: Clusters in Differential Gene Expression Data
6 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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324
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Tutorial: SingleCellExperiment object explained with a real-world example
bioconductor scRNA-seq single-cell
updated 6 months ago by 44k • written 6 months ago by ★ 4.5k
7
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5
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1.1k
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Tutorial: how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix RNAseq R
updated 8 months ago by • 0 • written 8 months ago by ★ 4.5k
0
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0
replies
1.8k
views
Comment: Comment: Transcription Start Site
9 months ago by Ming Tommy Tang ★ 4.5k
472 results • Page 1 of 10
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