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1
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708
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Comment: Comment: scRNAseq normalization
9 months ago by Ming Tommy Tang ★ 4.5k
1
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1
reply
3.2k
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Answer: Answer: Subsetting Seurat object based on list of cell barcodes
9 months ago by Ming Tommy Tang ★ 4.5k
6
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0
replies
799
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Tutorial: 12 useful command line tools and tricks for genomics data science
unix
updated 11 months ago by 12k • written 11 months ago by ★ 4.5k
0
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1
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521
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Comment: Comment: Deleting cells from seurat object
11 months ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
480
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Tutorial: How to convert sra files to fastq files using parallelized fastq-dump
fastq sra
11 months ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
484
views
Tutorial: How to Label the Y Axis with percentage sign and Order Bars in ggplot2 using a single cell dataset
seurat single-cell ggplot2
11 months ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
506
views
Tutorial: How to Use Biomart to Find Mouse Orthologs for Human Genes
ids gene bioconductor
11 months ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
1.4k
views
Comment: Comment: How to get enhancer regions
11 months ago by Ming Tommy Tang ★ 4.5k
0
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1
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1.4k
views
Comment: Comment: How to get enhancer regions
11 months ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
930
views
Comment: Comment: How to covert my gene IDs to gene Symbols
12 months ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
1.6k
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Comment: Comment: Mapping FASTQ files of scRNA-seq to reference genome
12 months ago by Ming Tommy Tang ★ 4.5k
2
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0
replies
1.2k
views
Comment: Comment: How to get started in bioinformatics
12 months ago by Ming Tommy Tang ★ 4.5k
2
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2
replies
1.4k
views
Answer: Answer: How to get enhancer regions
12 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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599
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Comment: Comment: annotation before integration
12 months ago by Ming Tommy Tang ★ 4.5k
3
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2
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1.3k
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Answer: Answer: How to rename multiple fasq files
12 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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545
views
Tutorial: 4 CITE-seq tutorials
CTIE-seq
12 months ago by Ming Tommy Tang ★ 4.5k
1
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1
reply
1.4k
views
Comment: Comment: multi-omics data integration: a case study with transcriptomics and genomics mut
12 months ago by Ming Tommy Tang ★ 4.5k
3
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3
replies
1.4k
views
Tutorial: multi-omics data integration: a case study with transcriptomics and genomics mutation data
mutation RNAseq multiomics
updated 12 months ago by ▴ 50 • written 16 months ago by ★ 4.5k
0
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0
replies
561
views
Tutorial: download metadata using GEOquery
computational-biology GEO metadata
updated 12 months ago by 44k • written 12 months ago by ★ 4.5k
1
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0
replies
501
views
Tutorial: CITEseq tutorial
CITEseq Alevin Seurat
13 months ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
4.0k
views
Comment: Comment: New ebook: From cell line to Command line to learn computational biology
13 months ago by Ming Tommy Tang ★ 4.5k
1
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0
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450
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Blog: How to use random forest for clustering
computational-biology random-forest
updated 13 months ago by 44k • written 13 months ago by ★ 4.5k
4
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2
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4.0k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
13 months ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
1.2k
views
Comment: Comment: FPKM values for DE analysis - Why?
14 months ago by Ming Tommy Tang ★ 4.5k
2
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0
replies
688
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Answer: Answer: Ensembl transcript IDs
14 months ago by Ming Tommy Tang ★ 4.5k
0
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1
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1.2k
views
Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
14 months ago by Ming Tommy Tang ★ 4.5k
2
votes
1
reply
704
views
Answer: Answer: Designing Bioinformatic Pipeline to work on the Single cell RNA sequencing data
14 months ago by Ming Tommy Tang ★ 4.5k
2
votes
1
reply
763
views
Answer: Answer: Downstream analysis during sc-ATAC seq
14 months ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
699
views
Tutorial: How to convert raw counts to TPM for TCGA data and make a heatmap across cancer types
RNAseq heatmap rstats TCGA
14 months ago by Ming Tommy Tang ★ 4.5k
6
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0
replies
4.6k
views
Answer: Answer: Picking optimal resolution for single cell in seurat pipeline
15 months ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
1.0k
views
Comment: Comment: 10X scRNA-seq v2 odd fastq format
15 months ago by Ming Tommy Tang ★ 4.5k
0
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1
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1.0k
views
Comment: Comment: How to run TRUST4 for BCR/TCR detection using 10X data?
15 months ago by Ming Tommy Tang ★ 4.5k
3
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0
replies
876
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Comment: Comment: Seeking a real project
15 months ago by Ming Tommy Tang ★ 4.5k
3
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0
replies
939
views
Answer: Answer: Bulk and Single cell TCRSeq analysis
16 months ago by Ming Tommy Tang ★ 4.5k
0
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1
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903
views
Answer: Answer: Blocky p300 ChIP-seq reads
16 months ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
734
views
Comment: Comment: How to choose the number of cluster in single cell multiome (RNA & ATAC)
16 months ago by Ming Tommy Tang ★ 4.5k
0
votes
0
replies
829
views
Tutorial: T Cell Clonal Analysis Using Single-cell RNA Sequencing and Reference Maps
RNAseq TCR single-cell computational biology
16 months ago by Ming Tommy Tang ★ 4.5k
1
vote
0
replies
718
views
Tutorial: cellular niches analysis with spatial transcriptome data in Seurat and Bioconductor
transcriptome rstats spatial single-cell
16 months ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
1.1k
views
Comment: Comment: DMR Analysis for RRBS: what annotation file to I use?
17 months ago by Ming Tommy Tang ★ 4.5k
0
votes
1
reply
701
views
Comment: Comment: How to resample contacts data to lower bins
17 months ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
963
views
Answer: Answer: Phasing Classical HLA Alleles
17 months ago by Ming Tommy Tang ★ 4.5k
1
vote
0
replies
742
views
Tutorial: common mistakes in using spreadsheets
excel spreadsheet structured-data
updated 17 months ago by 44k • written 17 months ago by ★ 4.5k
0
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0
replies
1.9k
views
Comment: Comment: Convert files made for b37 into hg19 human reference?
17 months ago by Ming Tommy Tang ★ 4.5k
1
vote
0
replies
808
views
Tutorial: How to convert gene ids in R
computational-biology gene-id rstats
updated 17 months ago by 44k • written 17 months ago by ★ 4.5k
0
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0
replies
1.5k
views
Comment: Comment: How to use UCSC genome browser to check the transcription factor binding at your
17 months ago by Ming Tommy Tang ★ 4.5k
0
votes
0
replies
880
views
Comment: Comment: Is there a way to prove that two VCFs came from the same person?
17 months ago by Ming Tommy Tang ★ 4.5k
2
votes
0
replies
3.4k
views
Tutorial: How to read multiple matrices from GEO into R and make multiple Seurat objects and merge them into a single object.
unix Seurat single-cell rstats
updated 17 months ago by 44k • written 17 months ago by ★ 4.5k
4
votes
2
replies
1.5k
views
Tutorial: How to use UCSC genome browser to check the transcription factor binding at your favorite gene
UCSC transcription factor ChIP-seq
17 months ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
832
views
Comment: Comment: How to plot VDJ clonotyping data in UMAP of Seurat object using Immunarch
17 months ago by Ming Tommy Tang ★ 4.5k
3
votes
0
replies
1.6k
views
Comment: Comment: interpreting results from pathway analysis
17 months ago by Ming Tommy Tang ★ 4.5k
472 results • Page 2 of 10
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