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Comment: Comment: Benjamini–Hochberg correction, FDR in genes' expressions
22 months ago by Ming Tommy Tang ★ 4.5k
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697
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Answer: Answer: Distinguishing specific reads from non-specific ones in KIR gene sequencing data
22 months ago by Ming Tommy Tang ★ 4.5k
3
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3.6k
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Answer: Answer: How to perform synteny alignments and plots only with a gene?
22 months ago by Ming Tommy Tang ★ 4.5k
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830
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Comment: Comment: deconvolution of spatial transcriptome
23 months ago by Ming Tommy Tang ★ 4.5k
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1.9k
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Answer: Answer: Best tools for scTCR-seq (VDJ) analysis?
23 months ago by Ming Tommy Tang ★ 4.5k
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2.4k
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Comment: Comment: Normalizing TCR data
23 months ago by Ming Tommy Tang ★ 4.5k
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0
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689
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Comment: Comment: Do I need to correct for sequencing depth in bulk RNA seq?
23 months ago by Ming Tommy Tang ★ 4.5k
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40k
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Answer: Answer: How to know that your RNA-seq is stranded or not?
24 months ago by Ming Tommy Tang ★ 4.5k
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1
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1.7k
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Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
2.0 years ago by Ming Tommy Tang ★ 4.5k
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1
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1.3k
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Answer: Answer: Counting and summation number of bases in a FASTQ.GZ file
2.0 years ago by Ming Tommy Tang ★ 4.5k
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2.2k
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Answer: Answer: 10x scRNAseq from just R1 and R2
2.0 years ago by Ming Tommy Tang ★ 4.5k
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1
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1.7k
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Comment: Comment: Any command line tools that can design primers from a multiple sequence alignmen
2.0 years ago by Ming Tommy Tang ★ 4.5k
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2
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958
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Answer: Answer: Verify logistic regression assumptions
updated 23 months ago by 44k • written 2.0 years ago by ★ 4.5k
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2.2k
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Comment: Comment: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
2.0 years ago by Ming Tommy Tang ★ 4.5k
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1.5k
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Comment: Comment: batch sequence retrieval using exon coordinates
2.0 years ago by Ming Tommy Tang ★ 4.5k
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1
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2.2k
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Answer: Answer: Unable to decide R1 and R2 from SRA data for Cell Ranger 10X count
2.0 years ago by Ming Tommy Tang ★ 4.5k
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1
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1.2k
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Answer: Answer: Mapping files to patients in TCGA (RNA-seq)
2.0 years ago by Ming Tommy Tang ★ 4.5k
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0
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2.8k
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Comment: Comment: UMAP labeling manipulation
2.0 years ago by Ming Tommy Tang ★ 4.5k
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1
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2.5k
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Comment: Comment: analyzing a read mapped file with python
2.0 years ago by Ming Tommy Tang ★ 4.5k
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3.1k
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Comment: Comment: nextflow script of RNA data analysis
2.0 years ago by Ming Tommy Tang ★ 4.5k
2
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0
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971
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Answer: Answer: How can I cluster the gene expression in the tissue between different species?
2.0 years ago by Ming Tommy Tang ★ 4.5k
1
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1
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3.1k
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Answer: Answer: nextflow script of RNA data analysis
2.0 years ago by Ming Tommy Tang ★ 4.5k
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0
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1.9k
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Answer: Answer: make volcano plot from multiple dataframes with same genes and different foldcha
2.0 years ago by Ming Tommy Tang ★ 4.5k
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0
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1.5k
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Answer: Answer: GSEA rnk-file.
2.0 years ago by Ming Tommy Tang ★ 4.5k
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0
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6.2k
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Answer: Answer: How to avoid over-correction by using harmony or CCA to batch correction in scRN
3.3 years ago by Ming Tommy Tang ★ 4.5k
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5.4k
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Comment: C: Obtain ChIPseq peaks from a bedgraph file with continuous regions
4.1 years ago by Ming Tommy Tang ★ 4.5k
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0
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2.8k
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Comment: C: No rule keywords allowed after run in snakefile
4.7 years ago by Ming Tommy Tang ★ 4.5k
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0
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2.9k
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Answer: A: Chip-exo peak-pair distribution heatmap
updated 5.0 years ago by 44k • written 10.6 years ago by ★ 4.5k
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0
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1.8k
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Answer: A: chipseq over various genomic locations
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
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0
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14k
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Comment: C: htseq-count for pair-end RNA-seq
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
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0
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3.4k
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Comment: C: Methods for differential allele-specific expression?
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
2
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0
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3.2k
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Answer: A: binding close to gene
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
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0
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5.4k
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Comment: Comment: HiSeq2000 RNA-seq QC
updated 3.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
2
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0
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2.7k
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Answer: A: TSS plot with htseq 0.6.1 gives segmentation fault
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
0
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1
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5.4k
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Comment: C: HiSeq2000 RNA-seq QC
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
0
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2
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5.4k
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Comment: C: HiSeq2000 RNA-seq QC
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
0
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0
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9.8k
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Answer: A: How Do I Search A Genome For A Known Motif, And Get An Interval File Of All Inst
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
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0
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6.0k
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Answer: A: How To Find Upstream/Downstream Bound Features With A Chip-Seq Analysis In Galax
updated 5.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
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0
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7.3k
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Comment: C: How to deal with the CNV file and NOCNV file measured by Affy SNP6.0 of level 3
updated 5.1 years ago by 44k • written 9.0 years ago by ★ 4.5k
1
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1
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7.1k
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Answer: A: Which Multiscale Genome Browser Is The Best At Visualizing Structural Variants?
updated 5.1 years ago by 44k • written 9.1 years ago by ★ 4.5k
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0
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Comment: C: count the number of transcription factor binding sites
updated 5.1 years ago by 44k • written 9.5 years ago by ★ 4.5k
1
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1
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3.4k
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Answer: A: Quality metrics of ChIP-seq BAM files
updated 5.2 years ago by 44k • written 9.3 years ago by ★ 4.5k
2
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0
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2.5k
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Answer: A: heatmap.2 keeps default settings despite specified
updated 5.2 years ago by 44k • written 9.6 years ago by ★ 4.5k
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2
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5.8k
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Answer: A: Reordering the bam file
updated 5.2 years ago by 44k • written 10.3 years ago by ★ 4.5k
0
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1
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3.3k
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Comment: C: SAM File target extraction
updated 5.2 years ago by 44k • written 10.4 years ago by ★ 4.5k
0
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1
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3.3k
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Answer: A: SAM File target extraction
updated 5.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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1
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12k
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Comment: C: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
updated 5.2 years ago by 44k • written 10.7 years ago by ★ 4.5k
0
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0
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8.7k
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Comment: C: Ucsc Mysql Query
updated 5.3 years ago by 44k • written 10.4 years ago by ★ 4.5k
5
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4
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4.2k
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normalize ChIP-seq data by copy number variation
ChIP-Seq CNV
updated 23 months ago by 44k • written 9.7 years ago by ★ 4.5k
1
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1
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13k
views
Comment: C: Interesting bioinformatics blogs (2017 edition)
5.6 years ago by Ming Tommy Tang ★ 4.5k
472 results • Page 4 of 10
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