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1
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0
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944
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Comment: C: No called peaks from macse 2 and the alignment rate 90%
5.8 years ago by Ming Tommy Tang ★ 4.5k
2
votes
3
replies
2.6k
views
Any tools to predict non-coding driver mutations
WGS
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 4.5k
0
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1
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5.2k
views
Comment: C: what tools to visualize structural variants VCF files?
updated 6.3 years ago by 44k • written 8.9 years ago by ★ 4.5k
1
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0
replies
27k
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Comment: C: Disease Associated Snps
updated 6.3 years ago by 44k • written 10.2 years ago by ★ 4.5k
10
votes
3
replies
7.2k
views
convert SNP calls to amino acid change
snp amino-acid
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 4.5k
0
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0
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2.8k
views
Comment: C: bedops -u does not work properly
7.0 years ago by Ming Tommy Tang ★ 4.5k
5
votes
11
replies
2.8k
views
bedops -u does not work properly
bedops bed intersect
updated 3.7 years ago by ★ 1.2k • written 7.0 years ago by ★ 4.5k
0
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0
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2.8k
views
Comment: C: bedops -u does not work properly
7.0 years ago by Ming Tommy Tang ★ 4.5k
0
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2
replies
2.8k
views
Comment: C: bedops -u does not work properly
7.0 years ago by Ming Tommy Tang ★ 4.5k
0
votes
1
reply
2.8k
views
Comment: C: bedops -u does not work properly
7.0 years ago by Ming Tommy Tang ★ 4.5k
0
votes
1
reply
2.8k
views
Comment: C: bedops -u does not work properly
7.0 years ago by Ming Tommy Tang ★ 4.5k
0
votes
0
replies
3.1k
views
Comment: C: Why do I get a weird copy number in the tumour?
7.0 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
5.7k
views
Answer: A: How to convert bam-readcount output to BED-VAF format
7.2 years ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
4.4k
views
Comment: C: indel preprocessing prior to bam-readcount
7.2 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
5.7k
views
Comment: C: How to convert bam-readcount output to BED-VAF format
7.2 years ago by Ming Tommy Tang ★ 4.5k
1
vote
2
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2.4k
views
sample order of the freebayes vcf output
WES freebayes vcf
7.4 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
10k
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Comment: C: Peak calling macs vs Homer
7.4 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
2.4k
views
Comment: C: sample order of the freebayes vcf output
7.4 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
2.1k
views
Comment: C: Any advanced and really structured course on Python language or MySql or R or Un
7.4 years ago by Ming Tommy Tang ★ 4.5k
1
vote
1
reply
2.3k
views
Comment: C: Download ENCODE Project BED files using REST API
7.5 years ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
4.3k
views
Answer: A: Downloading genomic interval for hg38
7.5 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
1.9k
views
Answer: A: bulk download in ENCODE
7.5 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
2.0k
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Comment: C: ChIP-seq analysis - More peaks in IP samples without activating the TF
7.5 years ago by Ming Tommy Tang ★ 4.5k
2
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0
replies
1.9k
views
Answer: A: How to use the qvalue function for multiple testing?
7.6 years ago by Ming Tommy Tang ★ 4.5k
5
votes
0
replies
46k
views
Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
7.6 years ago by Ming Tommy Tang ★ 4.5k
1
vote
0
replies
48k
views
Comment: Comment: When and why is bwa aln better then bwa mem?
updated 3.8 years ago by 44k • written 7.6 years ago by ★ 4.5k
0
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0
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1.3k
views
Answer: A: Good Pipeline for ChIPexo
7.6 years ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
4.7k
views
Comment: C: Peak calling for broad histone-modification regions
7.6 years ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
5.5k
views
Comment: C: Software for Tree Visualization
7.6 years ago by Ming Tommy Tang ★ 4.5k
0
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1
reply
5.5k
views
Comment: C: Software for Tree Visualization
7.6 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
3.8k
views
Comment: C: Seeking private tutor to learn RNA/ChIP-Seq data analysis
7.6 years ago by Ming Tommy Tang ★ 4.5k
7
votes
3
replies
3.8k
views
Answer: A: Seeking private tutor to learn RNA/ChIP-Seq data analysis
7.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
4.0k
views
Answer: A: Depth of coverage in Bam file does not match depth in VCF file
7.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
16k
views
Comment: C: TCGA/Broad Institute CNV Files Segment Mean
7.8 years ago by Ming Tommy Tang ★ 4.5k
3
votes
5
replies
11k
views
RNAseq heatmap.2 log2FC clustering
heatmap RNA-Seq
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 4.5k
1
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0
replies
8.1k
views
Comment: C: EaSeq - Interactive ChIP-seq analysis and visualization (for Windows)
8.1 years ago by Ming Tommy Tang ★ 4.5k
0
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1
reply
39k
views
Comment: C: question about GSEA
8.1 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
5.6k
views
Comment: C: p-value and adjusted p-value exactly the same
8.1 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
2.1k
views
Comment: C: Has anyone had experience with Q for ChIP-seq peak calling?
8.1 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
2.2k
views
Answer: A: regulation of gene expression of a set of genes
8.1 years ago by Ming Tommy Tang ★ 4.5k
0
votes
0
replies
119k
views
Comment: C: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
8.1 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
4.9k
views
Answer: A: TPM and RPKM normalization from counts dataframe
8.1 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
2.3k
views
Answer: A: For RNA seq data analysis
8.1 years ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
8.1k
views
Answer: A: GSEA preranked list, values with same rank?
8.1 years ago by Ming Tommy Tang ★ 4.5k
0
votes
0
replies
3.3k
views
Comment: C: Only one cluster in multiple tumor phylogeny samples
8.2 years ago by Ming Tommy Tang ★ 4.5k
2
votes
0
replies
3.4k
views
Answer: A: R package for clonal expansion
8.2 years ago by Ming Tommy Tang ★ 4.5k
0
votes
0
replies
3.3k
views
Comment: C: Only one cluster in multiple tumor phylogeny samples
8.2 years ago by Ming Tommy Tang ★ 4.5k
0
votes
2
replies
3.3k
views
Comment: C: Only one cluster in multiple tumor phylogeny samples
8.2 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
6.3k
views
Comment: C: Identifying the tumor clones and subclones with VAF from VarScan2
8.2 years ago by Ming Tommy Tang ★ 4.5k
0
votes
1
reply
5.0k
views
Comment: C: Sciclone on exome sequencing data
8.2 years ago by Ming Tommy Tang ★ 4.5k
472 results • Page 5 of 10
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