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Comment: Comment: Identifying the tumor clones and subclones with VAF from VarScan2
updated 3.2 years ago by 44k • written 8.2 years ago by ★ 4.5k
0
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1
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6.3k
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Comment: Comment: Identifying the tumor clones and subclones with VAF from VarScan2
updated 3.2 years ago by 44k • written 8.2 years ago by ★ 4.5k
2
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0
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6.5k
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Answer: A: Precomputed TCGA tumor purity data
8.3 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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5.0k
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Answer: A: (Modern, mid-2016) RNA-seq software pipeline
8.3 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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1.9k
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Comment: C: A tale of two heatmap function
8.3 years ago by Ming Tommy Tang ★ 4.5k
7
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2
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1.9k
views
Tutorial: A tale of two heatmap function
clustering heatmap
updated 21 months ago by 44k • written 8.3 years ago by ★ 4.5k
0
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0
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36k
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Comment: A: Heatmaps in R
8.3 years ago by Ming Tommy Tang ★ 4.5k
14
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0
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9.8k
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Tutorial: How to generate PCA plot and heatmaps in R
heatmap PCA RNA-Seq R
updated 21 months ago by 44k • written 8.3 years ago by ★ 4.5k
0
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0
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1.7k
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How to get Satellite DNA expression level from TCGA RNAseq data
RNA-Seq
8.4 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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4.3k
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Comment: C: Random Genomic Regions Of A Given Length Distribution
8.4 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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56k
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Comment: C: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
8.4 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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1.9k
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Comment: C: Confusion about the term genome coverage
8.5 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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4.2k
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Comment: C: Trimmomatic: Does it matter to trim the fastq before or after merging multiple r
8.5 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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1.9k
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Comment: C: Confusion about the term genome coverage
8.5 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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4.3k
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Answer: A: Visualization of ChIP-seq data (mapped reads)
8.5 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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4.3k
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Comment: A: Visualization of ChIP-seq data (mapped reads)
8.5 years ago by Ming Tommy Tang ★ 4.5k
3
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2
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2.0k
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Comment: C: ChIP data analysis high binding sites
8.5 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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1.8k
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Comment: C: any papers/methods on inferring whole genome doubling/non-reciprocal translocati
8.5 years ago by Ming Tommy Tang ★ 4.5k
1
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1
reply
5.3k
views
Answer: A: criteria for choosing proper parameters for MASC2 -- chip-seq ?
8.5 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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6.7k
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Answer: A: Combining RNA seq and H3K27ac ChIP seq data
8.5 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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2.1k
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Answer: A: Correlate binding sites of two transcription factor from chip-seq data
8.5 years ago by Ming Tommy Tang ★ 4.5k
2
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0
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2.4k
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Answer: A: Retrieve gene names from gene symbols using Entrez?
8.5 years ago by Ming Tommy Tang ★ 4.5k
2
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3
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1.8k
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any papers/methods on inferring whole genome doubling/non-reciprocal translocations from WGS data
sequencing
updated 8.5 years ago by ★ 3.2k • written 8.5 years ago by ★ 4.5k
0
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1
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8.1k
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Comment: C: EaSeq - Interactive ChIP-seq analysis and visualization (for Windows)
8.6 years ago by Ming Tommy Tang ★ 4.5k
2
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0
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4.6k
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Answer: A: How to get nucleotide sequences for a given list of genomic positions.
8.6 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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5.6k
views
Comment: C: [UPDATE] Thrown into a Bioinformatics Position
8.6 years ago by Ming Tommy Tang ★ 4.5k
3
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0
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5.6k
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Answer: A: [UPDATE] Thrown into a Bioinformatics Position
8.6 years ago by Ming Tommy Tang ★ 4.5k
0
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1
reply
6.7k
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Answer: A: Multisample vcf to table
8.6 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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16k
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Answer: A: Which Chip Seq Peak Callers Do You Use?
8.6 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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2.0k
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Is there any tool for assessing the significance of co-deletion or co-amplification of genes or genomic regions?
DNA-seq
8.6 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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2.1k
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Answer: A: Do I need to remove unmapped reads before running MACS2?
8.6 years ago by Ming Tommy Tang ★ 4.5k
3
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0
replies
10k
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Answer: A: Chip-Seq - Peak caller for broad enrichment of histone modifications?
8.6 years ago by Ming Tommy Tang ★ 4.5k
4
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0
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1.9k
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Comment: C: Depth of coverage
8.6 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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1.4k
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analyze Digital restriction enzyme analysis of methylation (DREAM) data
methylation
8.6 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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7.6k
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Comment: C: How can I calculate bisulfite conversion rate from RRBS data?
8.6 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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4.1k
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Comment: C: How Much Is Too Much For 5 Prime End Methylation Rate In Rrbs Data ?
8.6 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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7.6k
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Comment: C: How can I calculate bisulfite conversion rate from RRBS data?
8.6 years ago by Ming Tommy Tang ★ 4.5k
1
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1
reply
2.8k
views
Comment: C: Help simulating RRBS reads
8.6 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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7.3k
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Comment: C: Peak callers for ChIP seq comparison
8.7 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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7.3k
views
Comment: C: Peak callers for ChIP seq comparison
8.7 years ago by Ming Tommy Tang ★ 4.5k
8
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1
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7.3k
views
Answer: A: Peak callers for ChIP seq comparison
8.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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54k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
8.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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45k
views
Answer: A: FPKM vs raw counts vs RPKM
8.7 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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2.5k
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Comment: C: Chip-Seq (Transcription Factor) data resources
8.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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8.3k
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Comment: C: Visualising the number of overlapping peaks in ChIP-seq studies
8.7 years ago by Ming Tommy Tang ★ 4.5k
4
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1
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2.3k
views
Answer: A: new line to tab in every second column
8.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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2.3k
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Answer: A: new line to tab in every second column
8.7 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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4.6k
views
Answer: A: quantify signal in a chromosomal interval in different .bw files
8.7 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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7.1k
views
Comment: C: Which Multiscale Genome Browser Is The Best At Visualizing Structural Variants?
8.7 years ago by Ming Tommy Tang ★ 4.5k
1
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1
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4.4k
views
Comment: C: Visualize groups of conditions bys MDS.
8.8 years ago by Ming Tommy Tang ★ 4.5k
472 results • Page 6 of 10
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