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Comment: C: Is strand important when it comes to DNAse and ChIP-Seq peak calling?
8.8 years ago by Ming Tommy Tang ★ 4.5k
8
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1
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34k
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Answer: A: How to create a mutation landscape (waterfall) plot with GenVisR
8.8 years ago by Ming Tommy Tang ★ 4.5k
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54k
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Comment: C: Visualization of ChIP-seq data using Heatmaps
8.8 years ago by Ming Tommy Tang ★ 4.5k
2
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54k
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Comment: C: Visualization of ChIP-seq data using Heatmaps
8.8 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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54k
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Comment: C: Visualization of ChIP-seq data using Heatmaps
8.8 years ago by Ming Tommy Tang ★ 4.5k
3
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4
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54k
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Answer: A: Visualization of ChIP-seq data using Heatmaps
8.8 years ago by Ming Tommy Tang ★ 4.5k
1
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1
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54k
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Comment: C: Visualization of ChIP-seq data using Heatmaps
8.8 years ago by Ming Tommy Tang ★ 4.5k
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4.7k
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Comment: C: Merging And De-Duplicating Structural Variant Calls (Bedpe)
8.9 years ago by Ming Tommy Tang ★ 4.5k
8
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3
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5.2k
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what tools to visualize structural variants VCF files?
DNA-seq structural-variants browser
updated 2.5 years ago by 44k • written 8.9 years ago by ★ 4.5k
0
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0
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3.5k
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Comment: Comment: merge structural variant calls in bedpe format
updated 2.5 years ago by 44k • written 8.9 years ago by ★ 4.5k
0
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2
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3.5k
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merge structural variant calls in bedpe format
bedpe bedtools
updated 2.5 years ago by 44k • written 8.9 years ago by ★ 4.5k
0
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0
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2.6k
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Comment: C: check whether two bam files are sequenced from the same sample
9.0 years ago by Ming Tommy Tang ★ 4.5k
2
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2
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2.6k
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check whether two bam files are sequenced from the same sample
ChIP-Seq SNP WES
updated 2.5 years ago by 44k • written 9.0 years ago by ★ 4.5k
1
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4
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2.6k
views
ChIP-seq in cancer cell lines
ChIP-Seq
updated 9.0 years ago by ▴ 50 • written 10.1 years ago by ★ 4.5k
2
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1
reply
19k
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Extract Dendrogram Information From Heatmap Generated By Heatmap.2
heatmap
updated 9.0 years ago by ▴ 160 • written 11.5 years ago by ★ 4.5k
2
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2
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3.7k
views
can anyone explain read id sorted in the samblaster page
bam sequencing
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 4.5k
0
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0
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4.8k
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Comment: C: batch effect for ChIP-seq data
9.2 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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4.8k
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Comment: C: batch effect for ChIP-seq data
9.2 years ago by Ming Tommy Tang ★ 4.5k
4
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4
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4.8k
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batch effect for ChIP-seq data
ChIP-Seq
updated 2.4 years ago by 44k • written 9.2 years ago by ★ 4.5k
0
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1
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48k
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Comment: Comment: When and why is bwa aln better then bwa mem?
updated 3.8 years ago by 44k • written 9.2 years ago by ★ 4.5k
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0
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3.2k
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Comment: C: Chip Seq Peaks/ Enrichment Profilig?
9.2 years ago by Ming Tommy Tang ★ 4.5k
2
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2
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3.2k
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Answer: A: Chip Seq Peaks/ Enrichment Profilig?
9.2 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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4.7k
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Answer: A: Merging And De-Duplicating Structural Variant Calls (Bedpe)
9.3 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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7.2k
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Comment: C: convert SNP calls to amino acid change
9.3 years ago by Ming Tommy Tang ★ 4.5k
3
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0
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7.2k
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Answer: Answer: convert SNP calls to amino acid change
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 4.5k
6
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3
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4.8k
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what is the fastest way to sort big bam files? (300Gb)
bam
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 4.5k
0
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1
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14k
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Comment: C: Chipseq Wig File With The Input Subtracted From Chip Sample
9.3 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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14k
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Comment: Comment: Chipseq Wig File With The Input Subtracted From Chip Sample
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 4.5k
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0
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3.2k
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Comment: Comment: MACS2 reads report inconsistent with samtools flagstat
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 4.5k
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0
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3.2k
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Comment: Comment: MACS2 reads report inconsistent with samtools flagstat
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 4.5k
0
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1
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14k
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Comment: C: Chipseq Wig File With The Input Subtracted From Chip Sample
9.3 years ago by Ming Tommy Tang ★ 4.5k
0
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3
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3.2k
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MACS2 reads report inconsistent with samtools flagstat
ChIP-Seq MACS2
updated 2.3 years ago by 44k • written 9.3 years ago by ★ 4.5k
0
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0
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6.7k
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Comment: Comment: ChIP-seq analysis tutorial
updated 2.3 years ago by 44k • written 9.4 years ago by ★ 4.5k
14
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2
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6.7k
views
Tutorial: ChIP-seq analysis tutorial
ChIP-Seq
updated 21 months ago by 44k • written 9.4 years ago by ★ 4.5k
0
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0
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6.8k
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Answer: Answer: Making TSS plots for some genes for a particular histone mark
updated 2.3 years ago by 44k • written 9.4 years ago by ★ 4.5k
2
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1
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4.2k
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Answer: A: Is strand important when it comes to DNAse and ChIP-Seq peak calling?
9.4 years ago by Ming Tommy Tang ★ 4.5k
2
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0
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1.5k
views
Answer: Answer: What does it mean a H4K20me1 has a diffuse profile?
updated 2.3 years ago by 44k • written 9.4 years ago by ★ 4.5k
1
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0
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3.3k
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Answer: Answer: Programs That Report Structural Variations For Tumor/Normal In Vcf Format
updated 2.1 years ago by 44k • written 9.5 years ago by ★ 4.5k
3
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0
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49k
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Answer: Answer: Convert Refseq Id To Gene Name
updated 2.0 years ago by 44k • written 9.6 years ago by ★ 4.5k
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0
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5.2k
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Comment: C: Get all the translation start site for human genome
9.7 years ago by Ming Tommy Tang ★ 4.5k
1
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1
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31k
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Comment: Comment: How to generate a fasta file from a python dictionary or lists?
updated 23 months ago by 44k • written 9.7 years ago by ★ 4.5k
7
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3
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31k
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Answer: Answer: How to generate a fasta file from a python dictionary or lists?
updated 23 months ago by 44k • written 9.7 years ago by ★ 4.5k
0
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0
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31k
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Comment: C: How to generate a fasta file from a python dictionary or lists?
9.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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119k
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Comment: C: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
9.7 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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2.0k
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Comment: C: MACS: overalll expected FDR?
9.7 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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2.0k
views
Answer: Answer: MACS: overalll expected FDR?
updated 23 months ago by 44k • written 9.7 years ago by ★ 4.5k
0
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1
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4.2k
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Comment: Comment: normalize ChIP-seq data by copy number variation
updated 23 months ago by 44k • written 9.7 years ago by ★ 4.5k
0
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1
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2.8k
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Comment: C: Search for a "standard" PWM for Kozak Sequence
9.7 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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2.8k
views
Answer: A: Search for a "standard" PWM for Kozak Sequence
9.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
5.2k
views
Comment: Comment: Get all the translation start site for human genome
updated 23 months ago by 44k • written 9.7 years ago by ★ 4.5k
472 results • Page 7 of 10
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