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6.3k
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Answer: Answer: Drawing ChIPseq graphics
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 4.5k
1
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0
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21k
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Answer: A: Trimming fastq with quality
10.4 years ago by Ming Tommy Tang ★ 4.5k
16
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1
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66k
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Answer: Answer: How to convert to .SRA files to .FQ (FASTQ)
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 4.5k
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0
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2.9k
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Answer: Answer: Depth of RNAseq with sensitive detection
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 4.5k
2
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1
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4.1k
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Answer: Answer: List of known transcription factor binding sites along with the type of transcri
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 4.5k
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0
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3.5k
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Comment: Comment: Quality control ChiP-Seq
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 4.5k
1
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1
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6.8k
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Comment: C: chip-seq low signal vs background
10.4 years ago by Ming Tommy Tang ★ 4.5k
2
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0
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6.3k
views
Answer: Answer: Drawing ChIPseq graphics
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 4.5k
1
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0
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2.6k
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Comment: C: Mouse Chipseq Depth of seq
10.4 years ago by Ming Tommy Tang ★ 4.5k
3
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1
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2.4k
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Answer: Answer: Interpreting of ChiP-seq results
updated 3.1 years ago by 44k • written 10.5 years ago by ★ 4.5k
2
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0
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4.1k
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Comment: A: tools for mutation detection in gene
10.5 years ago by Ming Tommy Tang ★ 4.5k
1
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0
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4.2k
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Answer: Answer: Co-occurring TF motifs in peak file from ChIP-seq experiment
updated 3.1 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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1
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2.8k
views
Comment: Comment: Different results from Different Cufflinks versions
updated 3.1 years ago by 44k • written 10.5 years ago by ★ 4.5k
2
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1
reply
7.2k
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GAGE pathway analysis for RNA-seq
RNA-Seq
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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0
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2.8k
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Answer: A: Different results from Different Cufflinks versions
10.5 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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6.9k
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Comment: C: DESeq MA-plot diagnosis
10.5 years ago by Ming Tommy Tang ★ 4.5k
3
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0
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5.7k
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Answer: Answer: dealing with BATCH effect/ donor variation in RNA seq data
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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0
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8.0k
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Comment: C: Deseq's plotMA color-coding at random?
10.5 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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8.0k
views
Comment: A: Deseq's plotMA color-coding at random?
10.5 years ago by Ming Tommy Tang ★ 4.5k
1
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2
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6.9k
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DESeq MA-plot diagnosis
RNA-Seq
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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0
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4.6k
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Comment: C: count the number of transcription factor binding sites
10.5 years ago by Ming Tommy Tang ★ 4.5k
0
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1
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4.6k
views
Comment: A: count the number of transcription factor binding sites
10.5 years ago by Ming Tommy Tang ★ 4.5k
9
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2
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24k
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Answer: Answer: bigwig to peak
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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0
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3.5k
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Answer: Answer: Python workflow/pipeline repository?
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
2
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1
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3.7k
views
Answer: Answer: Useful bioinformatics source code resources?
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
2
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0
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7.6k
views
Answer: Answer: chip-seq analysis (bowtie2, MACS2)
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
2
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0
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4.1k
views
Answer: A: macs and bedtools
10.5 years ago by Ming Tommy Tang ★ 4.5k
1
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0
replies
6.5k
views
Answer: Answer: normalization RNA-seq data between different types of libraries
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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0
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8.3k
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Answer: Answer: Should the reads of biological replicates be combined for ChIP-seq peak calling?
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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0
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14k
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Comment: Comment: Converting .sra files to fastq
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
1
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0
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6.6k
views
Answer: Answer: Counting number of reads in my peak file
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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1
reply
5.5k
views
Comment: Comment: DESeq differential expression
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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1
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4.1k
views
Answer: Answer: Visualize reads in BAM file
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
3
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0
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4.0k
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Answer: Answer: Identification of functionally relevant regions from ChIP-seq experiments
updated 3.2 years ago by 44k • written 10.5 years ago by ★ 4.5k
0
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0
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3.4k
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Comment: C: Are adapters removed for fastq files dumped from sra from GEO?
10.6 years ago by Ming Tommy Tang ★ 4.5k
2
votes
2
replies
3.4k
views
Are adapters removed for fastq files dumped from sra from GEO?
fastq
updated 10.6 years ago by 105k • written 10.6 years ago by ★ 4.5k
0
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0
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7.8k
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Answer: A: Best values to use for a heatmap comparing conditions comprised of biological re
10.6 years ago by Ming Tommy Tang ★ 4.5k
0
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1
reply
4.9k
views
Answer: A: chipseq data normalization
10.6 years ago by Ming Tommy Tang ★ 4.5k
5
votes
2
replies
3.9k
views
How to resize a GenomicRange objects centered on a DNA motif
ChIP-Seq R
updated 3.3 years ago by 44k • written 10.7 years ago by ★ 4.5k
0
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1
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14k
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Comment: C: htseq-count for pair-end RNA-seq
10.7 years ago by Ming Tommy Tang ★ 4.5k
0
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1
reply
14k
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Comment: C: htseq-count for pair-end RNA-seq
10.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
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5.4k
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Comment: C: HiSeq2000 RNA-seq QC
10.7 years ago by Ming Tommy Tang ★ 4.5k
15
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12
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5.4k
views
HiSeq2000 RNA-seq QC
rna-seq
updated 3.0 years ago by 44k • written 10.7 years ago by ★ 4.5k
0
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0
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17k
views
Answer: A: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
10.7 years ago by Ming Tommy Tang ★ 4.5k
2
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1
reply
2.5k
views
Answer: A: Wig Files- Macs Vs. Igvtools Count In Focal Amplification
10.7 years ago by Ming Tommy Tang ★ 4.5k
0
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0
replies
4.9k
views
Comment: C: Differential Regions In Histone Modification
10.7 years ago by Ming Tommy Tang ★ 4.5k
2
votes
0
replies
33k
views
Answer: Answer: Star Or Tophat?
updated 3.8 years ago by 44k • written 11.0 years ago by ★ 4.5k
0
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0
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2.9k
views
Comment: C: Macs Chip-Seq Contorl
11.1 years ago by Ming Tommy Tang ★ 4.5k
0
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2
replies
2.9k
views
Macs Chip-Seq Contorl
chip-seq macs
updated 11.1 years ago by 4.8k • written 11.1 years ago by ★ 4.5k
0
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0
replies
3.1k
views
Comment: C: Snps At Tf Motifs
11.1 years ago by Ming Tommy Tang ★ 4.5k
472 results • Page 9 of 10
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