Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.1k
views
Comment: Comment: TPM values from TCGA datasets
22 months ago by rodolfo.peacewalker ▴ 390
1
vote
2
replies
2.1k
views
TPM values from TCGA datasets
RNAseq TPM TCGA TIMER
22 months ago by rodolfo.peacewalker ▴ 390
0
votes
2
replies
1.7k
views
Comment: Comment: Converting transcript_count_matrix to TPM values obtained from RNA seq data
2.0 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
1.7k
views
Comment: Comment: Converting transcript_count_matrix to TPM values obtained from RNA seq data
2.0 years ago by rodolfo.peacewalker ▴ 390
3
votes
2
replies
2.0k
views
BWA-MEM2 and samtools using for loop
BWA-MEM2 bash samtools
updated 2.6 years ago by 13k • written 2.6 years ago by ▴ 390
1
vote
0
replies
1.7k
views
Answer: Answer: Analyzing counts over 3 different timepoints and 2 conditions with DESeq2
3.1 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
1.1k
views
Comment: Comment: Deseq2 Result
3.1 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
6.2k
views
Comment: Comment: RNA-seq z-score normalization
3.1 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
2.2k
views
Comment: Comment: What is the best way to filter out the top differentially expressed genes and de
3.2 years ago by rodolfo.peacewalker ▴ 390
3
votes
1
reply
6.2k
views
Answer: Answer: RNA-seq z-score normalization
3.2 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
1.1k
views
Comment: Comment: Network analysis using distinct centrality measurements
3.2 years ago by rodolfo.peacewalker ▴ 390
1
vote
2
replies
1.1k
views
Network analysis using distinct centrality measurements
measures analysis igraph STRING centrality Network PPI
3.2 years ago by rodolfo.peacewalker ▴ 390
1
vote
1
reply
3.0k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
3.2 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
3.0k
views
Comment: Comment: Filter DGElist object: keep only genes expressed in sample at the same time as a
3.2 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
2.4k
views
Comment: Comment: Filtering relevant Gene Ontology (GO) results from Gene Set Enrichment Analysis
3.2 years ago by rodolfo.peacewalker ▴ 390
2
votes
0
replies
822
views
Answer: Answer: Clustering without having any replication
3.2 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
1.1k
views
Comment: Comment: Sum of rows for GSEA analysis
3.3 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
1.1k
views
Comment: Comment: Sum of rows for GSEA analysis
3.3 years ago by rodolfo.peacewalker ▴ 390
1
vote
1
reply
1.9k
views
Answer: Answer: how to build an interaction network in R
3.3 years ago by rodolfo.peacewalker ▴ 390
1
vote
4
replies
1.1k
views
Sum of rows for GSEA analysis
GSEA leading-edge R fGSEA
3.3 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
2.6k
views
Comment: Comment: Combining RNA-seq data from 2 experiments (DESeq2)
3.3 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
1.1k
views
Comment: Comment: DESeq2 design question
3.3 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
2.0k
views
Comment: Comment: RNA-seq doesn't match qPCR and western blot results
3.3 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
2.0k
views
Comment: Comment: RNA-seq doesn't match qPCR and western blot results
3.3 years ago by rodolfo.peacewalker ▴ 390
1
vote
0
replies
5.0k
views
Answer: Answer: BioMart dropping and duplicating Ensembl IDs while retrieving corresponding gene
3.4 years ago by rodolfo.peacewalker ▴ 390
1
vote
0
replies
1.0k
views
Comment: Comment: Pathway Analysis Interpretation
3.4 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
669
views
R is saving empty sheets for several KM plots using RTCGA package
RTCGA R
updated 20 months ago by 44k • written 3.4 years ago by ▴ 390
0
votes
1
reply
1.0k
views
Comment: Comment: Pathway Analysis Interpretation
3.4 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
2.1k
views
Comment: Comment: How install library(DESeq2), library(gplots), library(RColorBrewer) in R?
3.4 years ago by rodolfo.peacewalker ▴ 390
1
vote
1
reply
1.3k
views
Comment: Comment: GSEA - Strange Results interpretation - Error in DESEQ2 ?
3.4 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
690
views
Answer: Answer: Differential expression analysis
3.4 years ago by rodolfo.peacewalker ▴ 390
1
vote
0
replies
4.1k
views
Answer: Answer: Looping over a function in R, and needing a variable name to save output as uniq
3.4 years ago by rodolfo.peacewalker ▴ 390
5
votes
1
reply
4.7k
views
Answer: Answer: gct output in DESeq2
3.5 years ago by rodolfo.peacewalker ▴ 390
2
votes
0
replies
1.5k
views
Answer: Answer: Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antise
3.5 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
2.7k
views
Comment: Comment: Load GSEA software results into R
3.5 years ago by rodolfo.peacewalker ▴ 390
1
vote
1
reply
1.7k
views
Answer: Answer: How we can use DEG data for DSEA analysis
3.5 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
3.9k
views
Answer: Answer: DESeq2 count matrix read in
3.5 years ago by rodolfo.peacewalker ▴ 390
2
votes
0
replies
39k
views
Comment: Comment: output TMM normalized counts with edgeR
3.5 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
2.6k
views
Comment: Comment: Concatenating gmt files from msigdb
3.5 years ago by rodolfo.peacewalker ▴ 390
0
votes
1
reply
2.6k
views
Comment: Comment: Concatenating gmt files from msigdb
3.5 years ago by rodolfo.peacewalker ▴ 390
1
vote
5
replies
2.6k
views
Concatenating gmt files from msigdb
ssGSEA RNAseq Pathway KEGG REACTOME
updated 3.5 years ago by 88k • written 3.5 years ago by ▴ 390
1
vote
0
replies
2.3k
views
Comment: Comment: DESeq2 multiple group comparisons
3.6 years ago by rodolfo.peacewalker ▴ 390
1
vote
1
reply
2.3k
views
Answer: Answer: DESeq2 multiple group comparisons
3.6 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
1.0k
views
Comment: Comment: Working with multiple bam files from tumour vs normal samps in VarScan Somatic
3.6 years ago by rodolfo.peacewalker ▴ 390
0
votes
2
replies
1.0k
views
Working with multiple bam files from tumour vs normal samps in VarScan Somatic
Variants DNA-seq Galaxy VCF
3.6 years ago by rodolfo.peacewalker ▴ 390
0
votes
0
replies
2.0k
views
Comment: Comment: DESeq2 adjusted p-values of 0 when p-value > 0.05
3.6 years ago by rodolfo.peacewalker ▴ 390
2
votes
4
replies
2.3k
views
Looping in R to perform a GSEA analysis
RNA-Seq GSEA loops R
updated 3.6 years ago by 85k • written 4.1 years ago by ▴ 390
4
votes
1
reply
6.8k
views
Answer: Answer: How to filter out a list of specific genes from the DESeq object in R - bulk RNA
3.6 years ago by rodolfo.peacewalker ▴ 390
1
vote
0
replies
1.1k
views
Answer: Answer: Differentially expression analysis
3.6 years ago by rodolfo.peacewalker ▴ 390
1
vote
0
replies
1.3k
views
Comment: Comment: Mapping EntrezId to Ensembl IDs returns NA for pseudogenes and snoRNA
3.6 years ago by rodolfo.peacewalker ▴ 390
76 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6