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1
vote
2
replies
778
views
is there a tool to recover corrupted fastq files
fastq short-read
updated 6 months ago by • 0 • written 9 months ago by ▴ 60
3
votes
5
replies
778
views
Tutorial for analyzing WGBS data
NGS methylseq WGBS
8 months ago by pt.taklifi ▴ 60
0
votes
0
replies
778
views
Comment: Comment: Tutorial for analyzing WGBS data
8 months ago by pt.taklifi ▴ 60
0
votes
0
replies
778
views
Comment: Comment: Tutorial for analyzing WGBS data
8 months ago by pt.taklifi ▴ 60
0
votes
0
replies
778
views
Comment: Comment: Tutorial for analyzing WGBS data
8 months ago by pt.taklifi ▴ 60
0
votes
2
replies
970
views
are there any downloadable database for tissue specific DMRs?
t-DMR
updated 3.1 years ago by ▴ 80 • written 3.4 years ago by ▴ 60
0
votes
0
replies
844
views
annotating regions with annotate Peak and ucsc refGene gives different answers in some cases
gene_names r ngs annotate
3.4 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
3.5 years ago by pt.taklifi ▴ 60
1
vote
4
replies
1.1k
views
gene expression for a specific gene across for multiple cancer types in TCGA datasets
gene_expression TCGA RTCAG
3.5 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
3.5 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.6k
views
Comment: Comment: ATACseq batch effect coupled with biological effect
3.6 years ago by pt.taklifi ▴ 60
1
vote
3
replies
1.6k
views
ATACseq batch effect coupled with biological effect
batch-effect ATAC-seq
updated 17 months ago by 44k • written 3.6 years ago by ▴ 60
0
votes
0
replies
6.0k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.6 years ago by pt.taklifi ▴ 60
0
votes
1
reply
6.0k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.6 years ago by pt.taklifi ▴ 60
0
votes
0
replies
6.0k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.6 years ago by pt.taklifi ▴ 60
7
votes
6
replies
6.0k
views
How to create SAF from text file for FeatureCounts
featureCounts ATAC-seq
updated 3 months ago by ▴ 60 • written 3.6 years ago by ▴ 60
0
votes
0
replies
3.0k
views
Comment: Comment: get count matrix from bam files
3.6 years ago by pt.taklifi ▴ 60
2
votes
2
replies
3.0k
views
get count matrix from bam files
bam ATAC-seq
updated 17 months ago by 44k • written 3.6 years ago by ▴ 60
0
votes
0
replies
1.6k
views
how to get feature importance after SVM
high_dimensional SVM R
3.6 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.4k
views
Comment: Comment: How to implement k fold cv after randomForest
3.6 years ago by pt.taklifi ▴ 60
1
vote
2
replies
1.4k
views
How to implement k fold cv after randomForest
k_fold_cv R randomForest
3.6 years ago by pt.taklifi ▴ 60
2
votes
3
replies
826
views
How to remove repeats on galaxy
alignment repeats galaxy
updated 3.7 years ago by 20 • written 3.9 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Comment: C: how to select features for high dimension data?
3.7 years ago by pt.taklifi ▴ 60
1
vote
1
reply
891
views
how to determine low quality variants in vcf files
vcf variant_depth
3.7 years ago by pt.taklifi ▴ 60
0
votes
0
replies
3.4k
views
Comment: C: Merge bigwig Files with different intervals
3.7 years ago by pt.taklifi ▴ 60
1
vote
9
replies
3.4k
views
Merge bigwig Files with different intervals
bigwig Merge
3.7 years ago by pt.taklifi ▴ 60
2
votes
1
reply
2.3k
views
bedGraphToBigWig error : Expecting at least 3 words line 1 of chrom.sizes. got 2
bigwig bedGraph
updated 3.7 years ago by 85k • written 3.7 years ago by ▴ 60
0
votes
1
reply
3.4k
views
Comment: C: Merge bigwig Files with different intervals
3.7 years ago by pt.taklifi ▴ 60
4
votes
6
replies
8.3k
views
how to remove duplicates with picard
alignment deduplication
updated 3.7 years ago by 164k • written 3.7 years ago by ▴ 60
0
votes
0
replies
8.3k
views
Comment: C: how to remove duplicates with picard
3.7 years ago by pt.taklifi ▴ 60
0
votes
0
replies
8.3k
views
Comment: C: how to remove duplicates with picard
3.7 years ago by pt.taklifi ▴ 60
2
votes
1
reply
1.3k
views
samtools index error
alignment
updated 3.8 years ago by 164k • written 3.8 years ago by ▴ 60
8
votes
3
replies
1.0k
views
how to select features for high dimension data?
machine-learning
updated 12 months ago by 44k • written 3.8 years ago by ▴ 60
7
votes
6
replies
2.0k
views
nohup with while loop
bash loop SRAtoolkit
3.8 years ago by pt.taklifi ▴ 60
0
votes
0
replies
2.0k
views
Comment: C: nohup with while loop
3.8 years ago by pt.taklifi ▴ 60
0
votes
0
replies
2.0k
views
Comment: C: nohup with while loop
3.8 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: error with bowtie2 alignment
3.8 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: error with bowtie2 alignment
3.8 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.1k
views
Comment: C: error with bowtie2 alignment
3.8 years ago by pt.taklifi ▴ 60
2
votes
6
replies
1.1k
views
error with bowtie2 alignment
alignment error sequencing
3.8 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.4k
views
Comment: C: bcftools variant calling
3.8 years ago by pt.taklifi ▴ 60
0
votes
0
replies
857
views
Comment: C: sum of values in a column
3.8 years ago by pt.taklifi ▴ 60
0
votes
1
reply
857
views
Comment: C: sum of values in a column
3.8 years ago by pt.taklifi ▴ 60
4
votes
5
replies
857
views
sum of values in a column
r
3.8 years ago by pt.taklifi ▴ 60
3
votes
3
replies
1.6k
views
remove mitochondrial reads using Bowtie2
alignment
updated 3.8 years ago by ★ 5.2k • written 3.8 years ago by ▴ 60
0
votes
1
reply
1.5k
views
Comment: C: bigwigs to reads in peaks
3.8 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.5k
views
Comment: C: bigwigs to reads in peaks
3.9 years ago by pt.taklifi ▴ 60
0
votes
5
replies
1.5k
views
bigwigs to reads in peaks
R atac-seq
updated 17 months ago by 44k • written 3.9 years ago by ▴ 60
0
votes
0
replies
5.4k
views
Comment: C: how to resolve "command not found " error on macOS
3.9 years ago by pt.taklifi ▴ 60
0
votes
1
reply
5.4k
views
Comment: C: how to resolve "command not found " error on macOS
3.9 years ago by pt.taklifi ▴ 60
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