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1
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6
replies
4.9k
views
Mouse to Human Protein Alignment Maps
alignment sequence mouse
updated 9 months ago by ▴ 30 • written 8.1 years ago by ▴ 600
0
votes
0
replies
337
views
Reference Panel for Copy Number Analysis Based on Clinical Target Capture Sequencing
copynumber target-capture
17 months ago by Noushin N ▴ 600
1
vote
0
replies
2.5k
views
Comment: C: Ensembl REST API Optional Parameters
4.9 years ago by Noushin N ▴ 600
0
votes
0
replies
2.3k
views
Comment: C: Calling CNA from aCGH: Thresholding?
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 600
6
votes
6
replies
2.5k
views
Ensembl REST API Optional Parameters
ensembl VEP
updated 2.3 years ago by ★ 2.4k • written 4.9 years ago by ▴ 600
0
votes
0
replies
2.5k
views
Comment: C: Ensembl REST API Optional Parameters
4.9 years ago by Noushin N ▴ 600
0
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0
replies
1.2k
views
Comment: C: Rsamtools mpileup discrepancy
4.9 years ago by Noushin N ▴ 600
0
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2
replies
1.2k
views
Rsamtools mpileup discrepancy
samtools R
4.9 years ago by Noushin N ▴ 600
0
votes
0
replies
1.1k
views
Comment: C: Annotation with Ensembl REST API
5.0 years ago by Noushin N ▴ 600
0
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3
replies
1.1k
views
Annotation with Ensembl REST API
ensembl R API
updated 5.0 years ago by 24k • written 5.0 years ago by ▴ 600
0
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0
replies
1.1k
views
Comment: C: Annotation with Ensembl REST API
5.0 years ago by Noushin N ▴ 600
0
votes
1
reply
11k
views
Comment: C: Samtools Index Segmentation Fault
updated 5.1 years ago by 44k • written 10.7 years ago by ▴ 600
0
votes
0
replies
827
views
Intra-tumor Heterogeneity / Mutation Cellular Fraction in TCGA Data
TCGA Heterogeneity
5.9 years ago by Noushin N ▴ 600
0
votes
1
reply
1.7k
views
Array CGH quality control
array-cgh
updated 6.2 years ago by 88k • written 8.7 years ago by ▴ 600
2
votes
0
replies
2.2k
views
Answer: A: Mapability index (track) from UCSC
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 600
1
vote
1
reply
3.0k
views
Answer: A: using vcftools to add gene name to vcf file
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 600
0
votes
0
replies
1.8k
views
Comment: A: How to find patient sample.type in TCGA-PRAD ?
6.4 years ago by Noushin N ▴ 600
1
vote
0
replies
2.1k
views
Answer: A: Inconsistency of allele depth in BAM and VCF
6.6 years ago by Noushin N ▴ 600
0
votes
0
replies
1.5k
views
Comment: C: Why GWASs cannot speculate what kind of mutation the SNP would cause?
6.8 years ago by Noushin N ▴ 600
5
votes
0
replies
1.6k
views
Answer: A: identifying TP53 germline mutations which are also in tumor cells.
6.8 years ago by Noushin N ▴ 600
2
votes
0
replies
1.2k
views
Answer: A: Is it possible to check whether a sample is progeny of the other two samples fro
6.8 years ago by Noushin N ▴ 600
2
votes
1
reply
1.5k
views
Answer: A: Why GWASs cannot speculate what kind of mutation the SNP would cause?
6.8 years ago by Noushin N ▴ 600
1
vote
0
replies
1.8k
views
Answer: A: Changing Chromosome Notation in Bam Files to Include Sample ID
6.8 years ago by Noushin N ▴ 600
1
vote
1
reply
41k
views
Answer: A: Remove columns and rows which have only NAs without deleting all the data
7.3 years ago by Noushin N ▴ 600
0
votes
0
replies
2.5k
views
Answer: A: retrieve genomic coordinate on mRNA
7.4 years ago by Noushin N ▴ 600
0
votes
0
replies
4.4k
views
Comment: C: B Allele Frequency (VAF) Segmentation Analysis
7.7 years ago by Noushin N ▴ 600
1
vote
1
reply
1.9k
views
Comment: C: Where is the BigWig Supplementary Information?
7.8 years ago by Noushin N ▴ 600
0
votes
1
reply
2.4k
views
Comment: C: Understanding coverage command
7.8 years ago by Noushin N ▴ 600
0
votes
0
replies
1.6k
views
Answer: A: is there any R package to measure the efficiency of different exome capture kits
7.8 years ago by Noushin N ▴ 600
0
votes
2
replies
5.0k
views
Comment: C: How to extract FORMAT information (GT, PG, PI, etc) from each SAMPLE in a vcf fi
7.9 years ago by Noushin N ▴ 600
0
votes
1
reply
5.0k
views
Comment: C: How to extract FORMAT information (GT, PG, PI, etc) from each SAMPLE in a vcf fi
7.9 years ago by Noushin N ▴ 600
1
vote
2
replies
5.0k
views
Answer: A: How to extract FORMAT information (GT, PG, PI, etc) from each SAMPLE in a vcf fi
7.9 years ago by Noushin N ▴ 600
2
votes
0
replies
7.5k
views
Answer: A: Benjamin Hochberg adjust P-values
7.9 years ago by Noushin N ▴ 600
1
vote
1
reply
23k
views
Comment: C: Calculating Variant Allele Frequency
7.9 years ago by Noushin N ▴ 600
2
votes
1
reply
23k
views
Comment: C: Calculating Variant Allele Frequency
7.9 years ago by Noushin N ▴ 600
4
votes
1
reply
23k
views
Answer: A: Calculating Variant Allele Frequency
8.0 years ago by Noushin N ▴ 600
0
votes
1
reply
2.0k
views
Answer: A: Does ADTEx use CBS for segmentation?
8.0 years ago by Noushin N ▴ 600
0
votes
1
reply
3.3k
views
Answer: A: What the x-axis of this box plot is measuring?
8.1 years ago by Noushin N ▴ 600
1
vote
1
reply
2.8k
views
Comment: C: how to extract some probes from a file contains duplicated row names
8.1 years ago by Noushin N ▴ 600
1
vote
1
reply
2.8k
views
Answer: A: how to extract some probes from a file contains duplicated row names
8.1 years ago by Noushin N ▴ 600
0
votes
1
reply
4.9k
views
Comment: C: Mouse to Human Protein Alignment Maps
8.1 years ago by Noushin N ▴ 600
3
votes
1
reply
3.5k
views
Answer: A: Extract allele frequencies from VCF
8.2 years ago by Noushin N ▴ 600
1
vote
0
replies
1.7k
views
Comment: C: extract a table a subset from table
8.2 years ago by Noushin N ▴ 600
1
vote
0
replies
1.6k
views
Answer: A: Cancer DNA sequences
8.2 years ago by Noushin N ▴ 600
0
votes
1
reply
3.7k
views
Answer: A: SnpEff html result
8.3 years ago by Noushin N ▴ 600
0
votes
0
replies
1.8k
views
Comment: C: R script/package to plot mutation comparision in cancers
8.3 years ago by Noushin N ▴ 600
2
votes
1
reply
9.5k
views
Answer: A: Allele frequency of vcf file
8.3 years ago by Noushin N ▴ 600
6
votes
10
replies
4.5k
views
Somatic Mutation Phasing
cancer somatic haplotype
updated 8.3 years ago by 12k • written 10.8 years ago by ▴ 600
2
votes
1
reply
5.5k
views
Comment: C: Allele count for SNPs
8.3 years ago by Noushin N ▴ 600
7
votes
8
replies
7.5k
views
Parsing Base String From Samtools Mpileup
samtools mpileup
updated 3.0 years ago by 44k • written 11.4 years ago by ▴ 600
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