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141
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Comment: Comment: Detecting genomic signatures of drug resistance breast cancer in transcriptomic
1 day ago by DareDevil ★ 4.3k
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0
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1.1k
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Comment: Comment: Splitting of VCF file of CSQ field in the INFO column to tabular format.
9 weeks ago by DareDevil ★ 4.3k
0
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1
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23k
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Comment: Comment: What is the best way to rank genes for GSEA?
12 weeks ago by DareDevil ★ 4.3k
0
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1
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491
views
Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
3 months ago by DareDevil ★ 4.3k
2
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5
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491
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How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
R Peak ChIP-seq
updated 12 weeks ago by 85k • written 3 months ago by ★ 4.3k
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0
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7.7k
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Comment: Comment: Download Hg18 Snp Database
3 months ago by DareDevil ★ 4.3k
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0
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925
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Answer: Answer: Cibersort input data
3 months ago by DareDevil ★ 4.3k
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0
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167
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Can a Binary Signature Matrix Be Used in CIBERSORT for Deconvolution?
regression svm CIBERSORT svr
3 months ago by DareDevil ★ 4.3k
0
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0
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938
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Comment: Comment: Understanding how to get enrichment score in GSEA software from broad institute
3 months ago by DareDevil ★ 4.3k
1
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2
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330
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How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using Code?
tabix codons vcf variants gatk
updated 3 months ago by 164k • written 3 months ago by ★ 4.3k
0
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1
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450
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How to annoate the probe id to genes in Affymetrix Human Gene 2.0 ST Array [transcript (gene) version ?
biomart GEO microarray annotation
updated 3 months ago by ▴ 40 • written 3 months ago by ★ 4.3k
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0
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6.1k
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Answer: Answer: DESeq2 vst function error
4 months ago by DareDevil ★ 4.3k
0
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0
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237
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How to Obtain a GMT File for Pathway Enrichment Analysis in Gallus gallus Metabolomics Data?
metabolomics gsea pathways gmt
4 months ago by DareDevil ★ 4.3k
0
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0
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23k
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Comment: Comment: What is the best way to rank genes for GSEA?
4 months ago by DareDevil ★ 4.3k
1
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2
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23k
views
Comment: Comment: What is the best way to rank genes for GSEA?
4 months ago by DareDevil ★ 4.3k
3
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1
reply
768
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What is the normalization status of metabric data?
metabric normalization microarray cbioportal
updated 7 months ago by ▴ 20 • written 2.2 years ago by ★ 4.3k
2
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0
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12k
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Answer: Answer: fpkm to tpm conversion
10 months ago by DareDevil ★ 4.3k
0
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0
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2.3k
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Answer: Answer: How to remove binary files which are installed into /usr/local/bin
10 months ago by DareDevil ★ 4.3k
6
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2
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956
views
samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in a single block )
bam samtools hisat2
updated 10 months ago by ▴ 680 • written 10 months ago by ★ 4.3k
1
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0
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1.7k
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Comment: Comment: Survival Analysis for RNASeqV2 processed by PAM50 prediction subtype method
10 months ago by DareDevil ★ 4.3k
1
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0
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20k
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Comment: Comment: HISAT2 command help
10 months ago by DareDevil ★ 4.3k
2
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0
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497
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Answer: Answer: identify genes
10 months ago by DareDevil ★ 4.3k
2
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1
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1.1k
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Answer: Answer: Reference genome, BWA and right algorithm
10 months ago by DareDevil ★ 4.3k
2
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0
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6.5k
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Answer: Answer: Trimming by fastp for multiple PE fastq.gz files using shell script
11 months ago by DareDevil ★ 4.3k
2
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4
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827
views
How should I run ssgsea analysis ?
functional TPM enrichment gsea ssgsea
updated 11 months ago by 44k • written 12 months ago by ★ 4.3k
0
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0
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5.9k
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Comment: Comment: Convert FPKM to TPM in R
12 months ago by DareDevil ★ 4.3k
4
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3
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5.9k
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Answer: Answer: Convert FPKM to TPM in R
10 months ago by DareDevil ★ 4.3k
3
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1
reply
686
views
How will you perform batch correction in DESeq2 when you don't have any group information?
batch-correction DESeq2
updated 12 months ago by 44k • written 12 months ago by ★ 4.3k
3
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0
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666
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Answer: Answer: How to interpret the Variant Allele Frequency??
13 months ago by DareDevil ★ 4.3k
2
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0
replies
618
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Answer: Answer: I need help with univariate logistic regression in a set of microarray data
updated 13 months ago by 44k • written 13 months ago by ★ 4.3k
6
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1
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517
views
How to retrieve sample informations from given ID from Sequence Read Archives?
eutils SRA
updated 12 months ago by 44k • written 14 months ago by ★ 4.3k
2
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0
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5.7k
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Comment: Comment: bcftools multiallelic split not working
updated 14 months ago by 44k • written 14 months ago by ★ 4.3k
2
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0
replies
1.3k
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Comment: Comment: Number of genes covered in WES
15 months ago by DareDevil ★ 4.3k
2
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0
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374
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How to perform functional enrichment of Metabolites?
PerformPSEA metaboanalyst GSEA metabolites
15 months ago by DareDevil ★ 4.3k
3
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1
reply
1.3k
views
Answer: Answer: Number of genes covered in WES
15 months ago by DareDevil ★ 4.3k
2
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1
reply
1.0k
views
Comment: Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
16 months ago by DareDevil ★ 4.3k
7
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4
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1.0k
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Are there any ways to delete multiple jobs at Ensembl VEP?
api ensembl vep
updated 16 months ago by ★ 2.4k • written 16 months ago by ★ 4.3k
4
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1
reply
19k
views
Answer: Answer: BEDOPS gtf2bed conversion error with Ensembl GTF
updated 14 months ago by 44k • written 16 months ago by ★ 4.3k
3
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0
replies
1.1k
views
Comment: Comment: GOSemSim - difference between mgeneSim and mgoSim
16 months ago by DareDevil ★ 4.3k
4
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1
reply
1.1k
views
Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
16 months ago by DareDevil ★ 4.3k
4
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0
replies
1.1k
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Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
16 months ago by DareDevil ★ 4.3k
2
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0
replies
39k
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Answer: Answer: generating genome indexes with STAR
16 months ago by DareDevil ★ 4.3k
2
votes
0
replies
2.9k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
16 months ago by DareDevil ★ 4.3k
1
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0
replies
1.7k
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Comment: Comment: Does anyone know what cmpress is?
16 months ago by DareDevil ★ 4.3k
1
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0
replies
31k
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Comment: Comment: Where To Download Pam50 Gene Set?
16 months ago by DareDevil ★ 4.3k
1
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0
replies
1.6k
views
Comment: Comment: PAM50 analysis from RNAseq data
16 months ago by DareDevil ★ 4.3k
3
votes
0
replies
929
views
Answer: Answer: Is reciprocal best hit method applicable for non-coding RNA to find orthologs?
16 months ago by DareDevil ★ 4.3k
5
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1
reply
1.1k
views
Answer: Answer: Counting distance between kmer instances in a sequence
16 months ago by DareDevil ★ 4.3k
2
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0
replies
2.7k
views
Answer: Answer: Single end RNAseq data strandedness infer-experiment-py
16 months ago by DareDevil ★ 4.3k
2
votes
0
replies
2.8k
views
Comment: Comment: Question about featureCounts strand options
16 months ago by DareDevil ★ 4.3k
239 results • Page 1 of 5
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