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Issue with Fetching Population Allele Frequency in gnomAD GraphQL API
allelle frequency api GraphQL gnomad
11 weeks ago by DareDevil ★ 4.4k
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8.6k
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Answer: Answer: Getting sample information from GEO
11 weeks ago by DareDevil ★ 4.4k
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0
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641
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Comment: Comment: Merging featureCounts output for different species
3 months ago by DareDevil ★ 4.4k
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0
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581
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Comment: Comment: What is the next step after getting the raw counts matrix for RNA-seq data?
4 months ago by DareDevil ★ 4.4k
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0
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950
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Comment: Comment: Adding p value above plot
4 months ago by DareDevil ★ 4.4k
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0
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1.8k
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Comment: Comment: drug sensitivity prediction
4 months ago by DareDevil ★ 4.4k
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0
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398
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Comment: Comment: Detecting genomic signatures of drug resistance breast cancer in transcriptomic
6 months ago by DareDevil ★ 4.4k
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1.7k
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Comment: Comment: Splitting of VCF file of CSQ field in the INFO column to tabular format.
9 months ago by DareDevil ★ 4.4k
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1
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28k
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Comment: Comment: What is the best way to rank genes for GSEA?
9 months ago by DareDevil ★ 4.4k
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1
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1.1k
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Comment: Comment: How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
9 months ago by DareDevil ★ 4.4k
2
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5
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1.1k
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How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
R Peak ChIP-seq
updated 9 months ago by 88k • written 9 months ago by ★ 4.4k
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8.4k
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Comment: Comment: Download Hg18 Snp Database
9 months ago by DareDevil ★ 4.4k
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0
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1.5k
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Answer: Answer: Cibersort input data
10 months ago by DareDevil ★ 4.4k
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0
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341
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Can a Binary Signature Matrix Be Used in CIBERSORT for Deconvolution?
regression svm CIBERSORT svr
10 months ago by DareDevil ★ 4.4k
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1.2k
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Comment: Comment: Understanding how to get enrichment score in GSEA software from broad institute
10 months ago by DareDevil ★ 4.4k
1
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2
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657
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How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using Code?
tabix codons vcf variants gatk
updated 10 months ago by 166k • written 10 months ago by ★ 4.4k
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1
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891
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How to annoate the probe id to genes in Affymetrix Human Gene 2.0 ST Array [transcript (gene) version ?
biomart GEO microarray annotation
updated 10 months ago by ▴ 40 • written 10 months ago by ★ 4.4k
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0
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6.9k
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Answer: Answer: DESeq2 vst function error
10 months ago by DareDevil ★ 4.4k
0
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0
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401
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How to Obtain a GMT File for Pathway Enrichment Analysis in Gallus gallus Metabolomics Data?
metabolomics gsea pathways gmt
11 months ago by DareDevil ★ 4.4k
0
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0
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28k
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Comment: Comment: What is the best way to rank genes for GSEA?
11 months ago by DareDevil ★ 4.4k
1
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2
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28k
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Comment: Comment: What is the best way to rank genes for GSEA?
11 months ago by DareDevil ★ 4.4k
3
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1
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1.1k
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What is the normalization status of metabric data?
metabric normalization microarray cbioportal
updated 14 months ago by ▴ 20 • written 2.7 years ago by ★ 4.4k
2
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0
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13k
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Answer: Answer: fpkm to tpm conversion
16 months ago by DareDevil ★ 4.4k
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0
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3.5k
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Answer: Answer: How to remove binary files which are installed into /usr/local/bin
17 months ago by DareDevil ★ 4.4k
7
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2
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1.4k
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samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in a single block )
bam samtools hisat2
updated 17 months ago by ▴ 690 • written 17 months ago by ★ 4.4k
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0
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1.9k
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Comment: Comment: Survival Analysis for RNASeqV2 processed by PAM50 prediction subtype method
17 months ago by DareDevil ★ 4.4k
1
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0
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21k
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Comment: Comment: HISAT2 command help
17 months ago by DareDevil ★ 4.4k
2
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0
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797
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Answer: Answer: identify genes
17 months ago by DareDevil ★ 4.4k
2
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1
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1.5k
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Answer: Answer: Reference genome, BWA and right algorithm
17 months ago by DareDevil ★ 4.4k
2
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0
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7.3k
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Answer: Answer: Trimming by fastp for multiple PE fastq.gz files using shell script
17 months ago by DareDevil ★ 4.4k
2
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4
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1.2k
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How should I run ssgsea analysis ?
functional TPM enrichment gsea ssgsea
updated 18 months ago by 45k • written 18 months ago by ★ 4.4k
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0
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8.0k
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Comment: Comment: Convert FPKM to TPM in R
19 months ago by DareDevil ★ 4.4k
4
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3
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8.0k
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Answer: Answer: Convert FPKM to TPM in R
16 months ago by DareDevil ★ 4.4k
3
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1
reply
911
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How will you perform batch correction in DESeq2 when you don't have any group information?
batch-correction DESeq2
updated 19 months ago by 45k • written 19 months ago by ★ 4.4k
3
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0
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909
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Answer: Answer: How to interpret the Variant Allele Frequency??
20 months ago by DareDevil ★ 4.4k
2
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0
replies
818
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Answer: Answer: I need help with univariate logistic regression in a set of microarray data
updated 20 months ago by 45k • written 20 months ago by ★ 4.4k
6
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1
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720
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How to retrieve sample informations from given ID from Sequence Read Archives?
eutils SRA
updated 19 months ago by 45k • written 21 months ago by ★ 4.4k
2
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0
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7.2k
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Comment: Comment: bcftools multiallelic split not working
updated 20 months ago by 45k • written 21 months ago by ★ 4.4k
2
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0
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1.9k
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Comment: Comment: Number of genes covered in WES
22 months ago by DareDevil ★ 4.4k
2
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0
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482
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How to perform functional enrichment of Metabolites?
PerformPSEA metaboanalyst GSEA metabolites
22 months ago by DareDevil ★ 4.4k
3
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1
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1.9k
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Answer: Answer: Number of genes covered in WES
22 months ago by DareDevil ★ 4.4k
2
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1
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1.4k
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Comment: Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
22 months ago by DareDevil ★ 4.4k
7
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4
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1.4k
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Are there any ways to delete multiple jobs at Ensembl VEP?
api ensembl vep
updated 22 months ago by ★ 2.4k • written 22 months ago by ★ 4.4k
4
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1
reply
21k
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Answer: Answer: BEDOPS gtf2bed conversion error with Ensembl GTF
updated 20 months ago by 45k • written 23 months ago by ★ 4.4k
3
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0
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1.6k
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Comment: Comment: GOSemSim - difference between mgeneSim and mgoSim
23 months ago by DareDevil ★ 4.4k
4
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1
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1.6k
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Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
23 months ago by DareDevil ★ 4.4k
4
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0
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1.6k
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Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
23 months ago by DareDevil ★ 4.4k
2
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0
replies
41k
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Answer: Answer: generating genome indexes with STAR
23 months ago by DareDevil ★ 4.4k
2
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0
replies
4.0k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
23 months ago by DareDevil ★ 4.4k
1
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0
replies
2.3k
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Comment: Comment: Does anyone know what cmpress is?
23 months ago by DareDevil ★ 4.4k
245 results • Page 1 of 5
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