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2
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0
replies
6.2k
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Comment: Comment: mistakenly ran featureCounts in paired-end mode on single-read data
17 months ago by DareDevil ★ 4.3k
5
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0
replies
976
views
Answer: Answer: drug sensitivity prediction
17 months ago by DareDevil ★ 4.3k
2
votes
1
reply
39k
views
Answer: Answer: Generating consensus sequence from bam file
17 months ago by DareDevil ★ 4.3k
2
votes
1
reply
584
views
What is the possibility of Depth (DP) being higher than the coverage
GATK DP Coverage Depth HaplotypeCaller
updated 18 months ago by 11k • written 18 months ago by ★ 4.3k
3
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0
replies
15k
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Comment: Comment: Building Dict File for GATK
18 months ago by DareDevil ★ 4.3k
2
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0
replies
6.7k
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Comment: Comment: Human reference files in HG38 GATK resource bundle
18 months ago by DareDevil ★ 4.3k
2
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0
replies
5.4k
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Comment: Comment: GATK4 VariantRecalibrator resource error
18 months ago by DareDevil ★ 4.3k
1
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0
replies
1.7k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
19 months ago by DareDevil ★ 4.3k
2
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1
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1.7k
views
Answer: Answer: DESeq2 multiple conditions, time points and sample types
19 months ago by DareDevil ★ 4.3k
1
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0
replies
1.7k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
19 months ago by DareDevil ★ 4.3k
1
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0
replies
1.7k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
19 months ago by DareDevil ★ 4.3k
6
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1
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4.1k
views
Comment: Comment: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
updated 19 months ago by 44k • written 19 months ago by ★ 4.3k
4
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1
reply
4.1k
views
Comment: Comment: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
19 months ago by DareDevil ★ 4.3k
6
votes
1
reply
4.1k
views
Answer: Answer: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
updated 19 months ago by 44k • written 19 months ago by ★ 4.3k
4
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1
reply
2.2k
views
Comment: Comment: How to Remove Sample Names from Heatmap
20 months ago by DareDevil ★ 4.3k
5
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0
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2.2k
views
Answer: Answer: How to Remove Sample Names from Heatmap
20 months ago by DareDevil ★ 4.3k
4
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1
reply
2.2k
views
Comment: Comment: How to Remove Sample Names from Heatmap
20 months ago by DareDevil ★ 4.3k
4
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0
replies
1.2k
views
Comment: Comment: How to deal with the probe id mapping to multiple gene ids?
20 months ago by DareDevil ★ 4.3k
2
votes
0
replies
1.2k
views
Comment: Comment: How to deal with the probe id mapping to multiple gene ids?
20 months ago by DareDevil ★ 4.3k
11
votes
3
replies
1.2k
views
How to deal with the probe id mapping to multiple gene ids?
match microarray affymetrix probe gene
20 months ago by DareDevil ★ 4.3k
6
votes
3
replies
916
views
Informations for gene summary are missing in eutils api of NCBI?
NCBI esummary eutils Gene
updated 20 months ago by ▴ 760 • written 20 months ago by ★ 4.3k
0
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0
replies
916
views
Comment: Comment: Informations for gene summary are missing in eutils api of NCBI?
20 months ago by DareDevil ★ 4.3k
5
votes
1
reply
640
views
How do I retrieve withdrawn or replaced gene id for homosapiens from ncbi gene ?
NCBI Eutils
updated 20 months ago by 44k • written 20 months ago by ★ 4.3k
2
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0
replies
3.3k
views
Comment: Comment: Detection P-value in illumina data
21 months ago by DareDevil ★ 4.3k
2
votes
0
replies
3.7k
views
Answer: Answer: Graph using corrplot for multiple sets of data
21 months ago by DareDevil ★ 4.3k
3
votes
3
replies
3.3k
views
Tutorial: Generating count matrix for STAR counts in GDC v32.0 for RNA-Seq
GDC TCGABiolinks STAR
updated 21 months ago by 44k • written 2.6 years ago by ★ 4.3k
4
votes
0
replies
469
views
How to identify the batch informations from the sample ID?
batch-correction TCGAbatch DESeq2 TCGA
updated 21 months ago by 44k • written 21 months ago by ★ 4.3k
1
vote
0
replies
925
views
Comment: Comment: Gene ontology vs Gene set enrichment
23 months ago by DareDevil ★ 4.3k
1
vote
0
replies
3.2k
views
Comment: Comment: Can transcripts per million be fed into edgeR and voom?
24 months ago by DareDevil ★ 4.3k
2
votes
0
replies
9.6k
views
Comment: Comment: CPM or TPM in GSEA analysis
24 months ago by DareDevil ★ 4.3k
4
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1
reply
9.6k
views
Comment: Comment: CPM or TPM in GSEA analysis
24 months ago by DareDevil ★ 4.3k
9
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1
reply
9.6k
views
Answer: Answer: CPM or TPM in GSEA analysis
24 months ago by DareDevil ★ 4.3k
1
vote
0
replies
1.1k
views
Comment: Comment: Questions about supplementary file contents of a GEO dataset
24 months ago by DareDevil ★ 4.3k
3
votes
0
replies
3.2k
views
Answer: Answer: strandness of paired-end data
2.0 years ago by DareDevil ★ 4.3k
1
vote
0
replies
2.0k
views
Comment: Comment: RSeQC confusing output - Half fails to determine, half is reverse strand
2.0 years ago by DareDevil ★ 4.3k
1
vote
0
replies
3.7k
views
Comment: Comment: CIBERSORT input file for RNA-Seq data
2.0 years ago by DareDevil ★ 4.3k
0
votes
0
replies
1.1k
views
Comment: Comment: How to get per sample read depth from VCF with no DP field
2.1 years ago by DareDevil ★ 4.3k
7
votes
0
replies
13k
views
Answer: Answer: combining quantification (featureCounts) result files into a single dataset
2.1 years ago by DareDevil ★ 4.3k
3
votes
0
replies
8.1k
views
Answer: Answer: Featurecounts to DESEq2 - How to merge biological replicates?
2.1 years ago by DareDevil ★ 4.3k
2
votes
0
replies
2.6k
views
Answer: Answer: STAR alignment in a full directory
2.1 years ago by DareDevil ★ 4.3k
2
votes
0
replies
5.2k
views
Answer: Answer: How to run STAR with multiple files
2.1 years ago by DareDevil ★ 4.3k
4
votes
0
replies
19k
views
Answer: Answer: TrimGalore! on multiple paired fastq files
2.1 years ago by DareDevil ★ 4.3k
0
votes
1
reply
2.3k
views
Comment: Comment: Problem creating new conda environment
2.2 years ago by DareDevil ★ 4.3k
2
votes
1
reply
17k
views
Comment: Comment: How to do FPKM differential analysis?
2.3 years ago by DareDevil ★ 4.3k
1
vote
0
replies
11k
views
Comment: Comment: How to change color of rownames display in pheatmap
2.3 years ago by DareDevil ★ 4.3k
3
votes
2
replies
1.3k
views
A USER ERROR has occurred: Positive training model failed to converge.
gatk vcf max-gaussians
updated 2.3 years ago by • 0 • written 3.8 years ago by ★ 4.3k
1
vote
0
replies
977
views
Comment: Comment: The difference of RNA-seq data between TCGA and ENCODE
2.4 years ago by DareDevil ★ 4.3k
1
vote
1
reply
977
views
Comment: Comment: The difference of RNA-seq data between TCGA and ENCODE
2.4 years ago by DareDevil ★ 4.3k
3
votes
1
reply
7.9k
views
Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.5 years ago by DareDevil ★ 4.3k
2
votes
0
replies
7.4k
views
Comment: Comment: How to extract count matrix from TCGAbiolinks using STAR-Counts
2.6 years ago by DareDevil ★ 4.3k
239 results • Page 2 of 5
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