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0
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666
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What is the cut off used in TCGA vcf files for allelic frequency for calling it as somatic?
tcga vcf
3.8 years ago by DareDevil ★ 4.3k
6
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4
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4.5k
views
Are there any tutorials available for Nanostring data differential expression analysis using DEseq2 ?
nanostring deseq2 limma
updated 20 months ago by 44k • written 3.8 years ago by ★ 4.3k
0
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1
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4.5k
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Comment: C: Are there any tutorials available for Nanostring data differential expression an
3.8 years ago by DareDevil ★ 4.3k
1
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0
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14k
views
Answer: Answer: Bioinformatics Journal with no publishing fees?
updated 2.8 years ago by 44k • written 3.8 years ago by ★ 4.3k
4
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1
reply
1.3k
views
Are there any repository for panel of normal for running Mutect2?
Mutect2 PON panel of normal gatk
3.8 years ago by DareDevil ★ 4.3k
0
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0
replies
1.2k
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Comment: C: Agilent microarray data analysis end in no significant genes ?
3.8 years ago by DareDevil ★ 4.3k
1
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1
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1.2k
views
Comment: C: Agilent microarray data analysis end in no significant genes ?
3.8 years ago by DareDevil ★ 4.3k
0
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0
replies
3.0k
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Comment: C: Batch correction in DESeq2---Normalized Counts
3.8 years ago by DareDevil ★ 4.3k
2
votes
2
replies
790
views
What test can be conducted to check ratio between the groups are significant ?
pvalue statistical test p-value cibersort
3.8 years ago by DareDevil ★ 4.3k
0
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1
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1.2k
views
Comment: C: Agilent microarray data analysis end in no significant genes ?
3.8 years ago by DareDevil ★ 4.3k
6
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6
replies
1.2k
views
Agilent microarray data analysis end in no significant genes ?
microarray r limma
updated 3.8 years ago by 88k • written 3.8 years ago by ★ 4.3k
0
votes
0
replies
689
views
How to perform relatedness across multiple trio cohort ?
trio vcftools relatedness
3.8 years ago by DareDevil ★ 4.3k
1
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0
replies
1.4k
views
Comment: C: Download entire human rRNA sequences
3.8 years ago by DareDevil ★ 4.3k
1
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0
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1.4k
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Comment: C: Download entire human rRNA sequences
3.8 years ago by DareDevil ★ 4.3k
1
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0
replies
1.3k
views
Comment: C: A USER ERROR has occurred: Positive training model failed to converge.
3.9 years ago by DareDevil ★ 4.3k
0
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0
replies
4.3k
views
Comment: C: Too many unmapped reads - STAR alignment
3.9 years ago by DareDevil ★ 4.3k
1
vote
0
replies
3.0k
views
Comment: C: Should I use Z-score standardization or Min-Max scaling in biological data ?
3.9 years ago by DareDevil ★ 4.3k
0
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0
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3.5k
views
Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
3.9 years ago by DareDevil ★ 4.3k
2
votes
0
replies
3.5k
views
Answer: A: Is it possible to run haplotypecaller in gnu parallel ?
3.9 years ago by DareDevil ★ 4.3k
0
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0
replies
3.5k
views
Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
3.9 years ago by DareDevil ★ 4.3k
16
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15
replies
3.5k
views
Is it possible to run haplotypecaller in gnu parallel ?
gnu parallel HaplotypeCaller parallel gatk
3.9 years ago by DareDevil ★ 4.3k
0
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0
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3.5k
views
Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
3.9 years ago by DareDevil ★ 4.3k
0
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2
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3.5k
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Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
3.9 years ago by DareDevil ★ 4.3k
0
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0
replies
3.5k
views
Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
3.9 years ago by DareDevil ★ 4.3k
0
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0
replies
1.2k
views
Comment: C: How is allelle frequency calculated ?
3.9 years ago by DareDevil ★ 4.3k
0
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1
reply
1.2k
views
Comment: C: How is allelle frequency calculated ?
3.9 years ago by DareDevil ★ 4.3k
0
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1
reply
816
views
Comment: C: Regarding Liftover and results
3.9 years ago by DareDevil ★ 4.3k
0
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1
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1.2k
views
Comment: C: How is allelle frequency calculated ?
3.9 years ago by DareDevil ★ 4.3k
3
votes
6
replies
1.2k
views
How is allelle frequency calculated ?
vcf allelle frequency exome
updated 3.9 years ago by 164k • written 3.9 years ago by ★ 4.3k
10
votes
1
reply
923
views
Calling triovariants using varscan from a compressed mileup file ?
varscan samtools trio mpileup pipe
updated 3.9 years ago by ▴ 680 • written 3.9 years ago by ★ 4.3k
1
vote
0
replies
2.9k
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Comment: C: Is anybody experiencing problems downloading from the SRA?
3.9 years ago by DareDevil ★ 4.3k
5
votes
0
replies
1.5k
views
Answer: A: how to unique a file row-wise?
3.9 years ago by DareDevil ★ 4.3k
2
votes
1
reply
2.0k
views
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
3.9 years ago by DareDevil ★ 4.3k
8
votes
1
reply
2.0k
views
Answer: A: Recalibrating variants in GATK4.1 as compared to GATK3.7
3.9 years ago by DareDevil ★ 4.3k
2
votes
0
replies
2.4k
views
Answer: A: How to delete a node row in the node table in cytoscape
3.9 years ago by DareDevil ★ 4.3k
1
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0
replies
1.9k
views
Comment: C: What is dbsnp file and how can I find it?
3.9 years ago by DareDevil ★ 4.3k
6
votes
0
replies
2.4k
views
Answer: A: Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
3.9 years ago by DareDevil ★ 4.3k
19
votes
5
replies
2.4k
views
Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
qualimap bamqc multi-bamqc
3.9 years ago by DareDevil ★ 4.3k
8
votes
1
reply
1.3k
views
CalculateGenotypePosteriors: A USER ERROR has occurred: Invalid argument ' '.
CalculateGenotypePosteriors gatk trio ped
3.9 years ago by DareDevil ★ 4.3k
2
votes
0
replies
7.3k
views
Comment: C: Combine two VCF files with GATK4
3.9 years ago by DareDevil ★ 4.3k
4
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1
reply
7.3k
views
Answer: A: Combine two VCF files with GATK4
3.9 years ago by DareDevil ★ 4.3k
5
votes
2
replies
5.4k
views
Answer: A: GATK4 VariantRecalibrator resource error
3.9 years ago by DareDevil ★ 4.3k
1
vote
1
reply
1.6k
views
Comment: C: How to pipe samtools mileup with varscan trio caller?
3.9 years ago by DareDevil ★ 4.3k
0
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0
replies
1.6k
views
Comment: C: How to pipe samtools mileup with varscan trio caller?
3.9 years ago by DareDevil ★ 4.3k
1
vote
2
replies
3.2k
views
Comment: C: How to call denovo and rare variants from a trios cohort?
3.9 years ago by DareDevil ★ 4.3k
2
votes
0
replies
2.4k
views
Comment: C: Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
3.9 years ago by DareDevil ★ 4.3k
10
votes
4
replies
1.6k
views
How to pipe samtools mileup with varscan trio caller?
varscan samtools pipe
3.9 years ago by DareDevil ★ 4.3k
0
votes
0
replies
2.2k
views
Comment: C: Is this a good workflow to find denovo mutations in trios?
3.9 years ago by DareDevil ★ 4.3k
0
votes
1
reply
3.2k
views
Comment: C: How to call denovo and rare variants from a trios cohort?
3.9 years ago by DareDevil ★ 4.3k
0
votes
1
reply
2.4k
views
Comment: C: Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
3.9 years ago by DareDevil ★ 4.3k
239 results • Page 4 of 5
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