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4.1k
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Comment: C: DEG analysis of METABRIC data from cBIOPORTAL
4.3 years ago by DareDevil ★ 4.4k
0
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0
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3.0k
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Comment: C: CIBERSORT: Errors were encountered in input files, run aborted:
4.3 years ago by DareDevil ★ 4.4k
0
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0
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3.0k
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Comment: C: CIBERSORT: Errors were encountered in input files, run aborted:
4.3 years ago by DareDevil ★ 4.4k
2
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4
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3.0k
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CIBERSORT: Errors were encountered in input files, run aborted:
deconvolution cibersort
updated 2.3 years ago by 45k • written 4.3 years ago by ★ 4.4k
3
votes
0
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6.6k
views
Comment: C: [mem_sam_pe] paired reads have different names. Without -p
4.3 years ago by DareDevil ★ 4.4k
2
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0
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6.6k
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Answer: A: [mem_sam_pe] paired reads have different names. Without -p
4.3 years ago by DareDevil ★ 4.4k
0
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0
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719
views
What is the cut off used in TCGA vcf files for allelic frequency for calling it as somatic?
tcga vcf
4.3 years ago by DareDevil ★ 4.4k
6
votes
4
replies
4.9k
views
Are there any tutorials available for Nanostring data differential expression analysis using DEseq2 ?
nanostring deseq2 limma
updated 2.3 years ago by 45k • written 4.3 years ago by ★ 4.4k
0
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1
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4.9k
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Comment: C: Are there any tutorials available for Nanostring data differential expression an
4.3 years ago by DareDevil ★ 4.4k
1
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0
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15k
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Answer: Answer: Bioinformatics Journal with no publishing fees?
updated 3.4 years ago by 45k • written 4.3 years ago by ★ 4.4k
4
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1
reply
1.5k
views
Are there any repository for panel of normal for running Mutect2?
Mutect2 PON panel of normal gatk
4.3 years ago by DareDevil ★ 4.4k
0
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0
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1.5k
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Comment: C: Agilent microarray data analysis end in no significant genes ?
4.3 years ago by DareDevil ★ 4.4k
1
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1
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1.5k
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Comment: C: Agilent microarray data analysis end in no significant genes ?
4.3 years ago by DareDevil ★ 4.4k
0
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0
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3.6k
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Comment: C: Batch correction in DESeq2---Normalized Counts
4.3 years ago by DareDevil ★ 4.4k
2
votes
2
replies
959
views
What test can be conducted to check ratio between the groups are significant ?
pvalue statistical test p-value cibersort
4.3 years ago by DareDevil ★ 4.4k
0
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1
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1.5k
views
Comment: C: Agilent microarray data analysis end in no significant genes ?
4.4 years ago by DareDevil ★ 4.4k
6
votes
6
replies
1.5k
views
Agilent microarray data analysis end in no significant genes ?
microarray r limma
updated 4.4 years ago by 89k • written 4.4 years ago by ★ 4.4k
0
votes
0
replies
784
views
How to perform relatedness across multiple trio cohort ?
trio vcftools relatedness
4.4 years ago by DareDevil ★ 4.4k
1
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0
replies
1.6k
views
Comment: C: Download entire human rRNA sequences
4.4 years ago by DareDevil ★ 4.4k
1
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0
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1.6k
views
Comment: C: Download entire human rRNA sequences
4.4 years ago by DareDevil ★ 4.4k
1
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0
replies
1.4k
views
Comment: C: A USER ERROR has occurred: Positive training model failed to converge.
4.4 years ago by DareDevil ★ 4.4k
0
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0
replies
4.9k
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Comment: C: Too many unmapped reads - STAR alignment
4.4 years ago by DareDevil ★ 4.4k
1
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0
replies
3.3k
views
Comment: C: Should I use Z-score standardization or Min-Max scaling in biological data ?
4.4 years ago by DareDevil ★ 4.4k
0
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0
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4.2k
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Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
4.4 years ago by DareDevil ★ 4.4k
2
votes
0
replies
4.2k
views
Answer: A: Is it possible to run haplotypecaller in gnu parallel ?
4.4 years ago by DareDevil ★ 4.4k
0
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0
replies
4.2k
views
Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
4.4 years ago by DareDevil ★ 4.4k
16
votes
15
replies
4.2k
views
Is it possible to run haplotypecaller in gnu parallel ?
gnu parallel HaplotypeCaller parallel gatk
4.4 years ago by DareDevil ★ 4.4k
0
votes
0
replies
4.2k
views
Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
4.4 years ago by DareDevil ★ 4.4k
0
votes
2
replies
4.2k
views
Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
4.4 years ago by DareDevil ★ 4.4k
0
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0
replies
4.2k
views
Comment: C: Is it possible to run haplotypecaller in gnu parallel ?
4.4 years ago by DareDevil ★ 4.4k
0
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0
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1.4k
views
Comment: C: How is allelle frequency calculated ?
4.4 years ago by DareDevil ★ 4.4k
0
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1
reply
1.4k
views
Comment: C: How is allelle frequency calculated ?
4.4 years ago by DareDevil ★ 4.4k
0
votes
1
reply
901
views
Comment: C: Regarding Liftover and results
4.4 years ago by DareDevil ★ 4.4k
0
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1
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1.4k
views
Comment: C: How is allelle frequency calculated ?
4.4 years ago by DareDevil ★ 4.4k
3
votes
6
replies
1.4k
views
How is allelle frequency calculated ?
vcf allelle frequency exome
updated 4.4 years ago by 166k • written 4.4 years ago by ★ 4.4k
10
votes
1
reply
1.1k
views
Calling triovariants using varscan from a compressed mileup file ?
varscan samtools trio mpileup pipe
updated 4.4 years ago by ▴ 690 • written 4.4 years ago by ★ 4.4k
1
vote
0
replies
3.4k
views
Comment: C: Is anybody experiencing problems downloading from the SRA?
4.4 years ago by DareDevil ★ 4.4k
5
votes
0
replies
1.9k
views
Answer: A: how to unique a file row-wise?
4.4 years ago by DareDevil ★ 4.4k
2
votes
1
reply
2.5k
views
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
4.4 years ago by DareDevil ★ 4.4k
8
votes
1
reply
2.5k
views
Answer: A: Recalibrating variants in GATK4.1 as compared to GATK3.7
4.4 years ago by DareDevil ★ 4.4k
2
votes
0
replies
2.6k
views
Answer: A: How to delete a node row in the node table in cytoscape
4.4 years ago by DareDevil ★ 4.4k
1
vote
0
replies
2.1k
views
Comment: C: What is dbsnp file and how can I find it?
4.4 years ago by DareDevil ★ 4.4k
6
votes
0
replies
2.9k
views
Answer: A: Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
4.4 years ago by DareDevil ★ 4.4k
19
votes
5
replies
2.9k
views
Qualimap: java.lang.RuntimeException: The raw data doesn't exist for sample ?
qualimap bamqc multi-bamqc
4.4 years ago by DareDevil ★ 4.4k
8
votes
1
reply
1.4k
views
CalculateGenotypePosteriors: A USER ERROR has occurred: Invalid argument ' '.
CalculateGenotypePosteriors gatk trio ped
4.4 years ago by DareDevil ★ 4.4k
2
votes
0
replies
8.6k
views
Comment: C: Combine two VCF files with GATK4
4.4 years ago by DareDevil ★ 4.4k
4
votes
1
reply
8.6k
views
Answer: A: Combine two VCF files with GATK4
4.4 years ago by DareDevil ★ 4.4k
5
votes
2
replies
5.9k
views
Answer: A: GATK4 VariantRecalibrator resource error
4.4 years ago by DareDevil ★ 4.4k
1
vote
1
reply
1.9k
views
Comment: C: How to pipe samtools mileup with varscan trio caller?
4.4 years ago by DareDevil ★ 4.4k
0
votes
0
replies
1.9k
views
Comment: C: How to pipe samtools mileup with varscan trio caller?
4.4 years ago by DareDevil ★ 4.4k
245 results • Page 4 of 5
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