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".glm.firth.hybrid" output file in plink2 does not give correct CASE_ALLELE_CT values
plink GWAS logisticRegression
updated 2.7 years ago by 11k • written 2.7 years ago by ▴ 10
3
votes
3
replies
1.0k
views
Change SNPID in vcf file with awk
vcf SNPID
updated 2.9 years ago by 21k • written 2.9 years ago by ▴ 10
0
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1
reply
745
views
Change SNP ID strings in PLINK files
PLINK SNP ID
updated 2.9 years ago by ★ 4.8k • written 2.9 years ago by ▴ 10
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0
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818
views
Comment: Comment: 8 Million SNPs in Whole Exome Sequencing vcf file
3.0 years ago by L_to_the_m ▴ 10
0
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3
replies
818
views
8 Million SNPs in Whole Exome Sequencing vcf file
Whole Sequencing Exome WES
updated 3.0 years ago by 164k • written 3.0 years ago by ▴ 10
0
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0
replies
473
views
Variant search in dbSNP on Exon or Intron
reference dbSNP SNP report
3.0 years ago by L_to_the_m ▴ 10
0
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0
replies
562
views
How does PLINK work?
PLINK logisticRegression GWAS
3.2 years ago by L_to_the_m ▴ 10
1
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1
reply
1.1k
views
Imputation with Beagle 5.2 for whole exome data at once
Beagle Imputation
updated 3.5 years ago by 2.9k • written 3.5 years ago by ▴ 10
0
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0
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1.3k
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Comment: Comment: What is the advantage of having BAM files per sample compared to one BAM file co
3.5 years ago by L_to_the_m ▴ 10
0
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1
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1.3k
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Comment: Comment: What is the advantage of having BAM files per sample compared to one BAM file co
3.5 years ago by L_to_the_m ▴ 10
1
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4
replies
1.3k
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What is the advantage of having BAM files per sample compared to one BAM file containing all samples?
NGS BAM SNPcalling
3.5 years ago by L_to_the_m ▴ 10
0
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2
replies
1.5k
views
Comment: C: How to calculate p-values from PLINK output by hand
3.7 years ago by L_to_the_m ▴ 10
0
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5
replies
1.5k
views
How to calculate p-values from PLINK output by hand
plink p-values
3.7 years ago by L_to_the_m ▴ 10
0
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1
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2.4k
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Comment: C: Minor allele count report with --freq count in PLINK2
3.7 years ago by L_to_the_m ▴ 10
5
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6
replies
2.4k
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Minor allele count report with --freq count in PLINK2
PLINK MAF
updated 3.7 years ago by 11k • written 3.7 years ago by ▴ 10
0
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1
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2.4k
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Comment: C: Minor allele count report with --freq count in PLINK2
3.7 years ago by L_to_the_m ▴ 10
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