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3
votes
5
replies
1.8k
views
Problem in loading multiple BAM files in IGV
WGS IGV BAM
updated 23 months ago by 44k • written 23 months ago by ▴ 20
0
votes
0
replies
366
views
Variant calling from merged bam file with one vcf output
bam WGS variant calling
2.4 years ago by askif4 ▴ 20
1
vote
4
replies
1.4k
views
R ComplexHeatmap showing wrong output for for clustering columns
heatmap clustering R dendrogram
updated 2.9 years ago by 11k • written 2.9 years ago by ▴ 20
0
votes
1
reply
1.4k
views
Comment: Comment: R ComplexHeatmap showing wrong output for for clustering columns
2.9 years ago by askif4 ▴ 20
0
votes
1
reply
1.4k
views
Comment: Comment: How to compare alignments(SAM/BAM files) aligned to different references?
3.3 years ago by askif4 ▴ 20
1
vote
3
replies
1.4k
views
How to compare alignments(SAM/BAM files) aligned to different references?
sam WGS NGS bam alignment
updated 3.3 years ago by ▴ 580 • written 3.3 years ago by ▴ 20
0
votes
0
replies
20k
views
Comment: Comment: GRCm39 (mm39) vs GRCm38(mm10)
3.7 years ago by askif4 ▴ 20
7
votes
2
replies
20k
views
GRCm39 (mm39) vs GRCm38(mm10)
genome reference mouse DNA dna
updated 3.7 years ago by 147k • written 3.7 years ago by ▴ 20
0
votes
0
replies
788
views
Is there any good chromosome recombination(crossover) analysis tools that are not old?
recombination Assembly gene sequencing
3.9 years ago by askif4 ▴ 20
0
votes
0
replies
1.1k
views
Questions using "WhatsHap" tool for haplotype phasing
SNP haplotype phasing sequencing
3.9 years ago by askif4 ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: How to check if a Fastq file is contaminated with other strains?
3.9 years ago by askif4 ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: How to check if a Fastq file is contaminated with other strains?
3.9 years ago by askif4 ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: How to check if a Fastq file is contaminated with other strains?
3.9 years ago by askif4 ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: How to check if a Fastq file is contaminated with other strains?
3.9 years ago by askif4 ▴ 20
4
votes
9
replies
2.7k
views
6 follow
How to check if a Fastq file is contaminated with other strains?
gene next-gen sequencing assembly
updated 3.3 years ago by ▴ 80 • written 3.9 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Comment: C: How to calculate VAF from BAM or SAM(+pileups) files using pysam?
3.9 years ago by askif4 ▴ 20
1
vote
3
replies
1.5k
views
How to calculate VAF from BAM or SAM(+pileups) files using pysam?
SNP sequencing bam VAF pysam
3.9 years ago by askif4 ▴ 20
0
votes
0
replies
906
views
How to determine specific strains(mouse) from BAM(or VCF) by unknown sample? (using or not using dbSNPs)
SNP VCF dbSNP mouse
4.0 years ago by askif4 ▴ 20
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