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205
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activepathways background list problem
integration atacseq rnaseq activepathways
4 months ago by biology_inform ▴ 50
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1
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711
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Comment: Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
6 months ago by biology_inform ▴ 50
1
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5
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711
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Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
circos atacseq
updated 6 months ago by 164k • written 6 months ago by ▴ 50
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1
reply
514
views
homer findMotifsGenome.pl
chip-seq atac-seq homer
updated 10 months ago by ★ 1.8k • written 10 months ago by ▴ 50
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0
replies
314
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deeptools k-means clustering
heatmap deeptools chipseq
11 months ago by biology_inform ▴ 50
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0
replies
503
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Creating heatmap for ChIP-seq using deeptools
heatmap chipseq chip deeptools visualization
12 months ago by biology_inform ▴ 50
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0
replies
811
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Comment: Comment: gene correlations in between two groups
14 months ago by biology_inform ▴ 50
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1
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811
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Comment: Comment: gene correlations in between two groups
14 months ago by biology_inform ▴ 50
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1
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811
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Comment: Comment: gene correlations in between two groups
14 months ago by biology_inform ▴ 50
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6
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811
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gene correlations in between two groups
gene-expression correlation
14 months ago by biology_inform ▴ 50
1
vote
7
replies
4.5k
views
7 follow
RNA-Seq analysis with Python
python RNA-Seq data-analysis
updated 16 months ago by ▴ 140 • written 3.9 years ago by ▴ 50
2
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5
replies
29k
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FastQC command line usage
command-line FastQC linux CentOS
updated 16 months ago by ▴ 90 • written 2.7 years ago by ▴ 50
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0
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1.4k
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Comment: Comment: clustering changes in complex heatmap everytime
16 months ago by biology_inform ▴ 50
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4
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1.4k
views
clustering changes in complex heatmap everytime
rnaseq heatmap complex
16 months ago by biology_inform ▴ 50
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0
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1.4k
views
Comment: Comment: clustering changes in complex heatmap everytime
16 months ago by biology_inform ▴ 50
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1
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1.0k
views
Comment: Comment: complex heatmap
17 months ago by biology_inform ▴ 50
2
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5
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1.0k
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complex heatmap
rna-seq complexheatmap
updated 17 months ago by ★ 4.5k • written 17 months ago by ▴ 50
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3
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1.2k
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complex heatmap with CPM
edgeR rna-seq dge heatmap deseq2
updated 17 months ago by 85k • written 17 months ago by ▴ 50
1
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3
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1.0k
views
rna seq design matrix
edgeR deseq2 modelmatrix dge rna-seq
updated 18 months ago by 85k • written 18 months ago by ▴ 50
0
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1
reply
830
views
GSEA with duplicate sample
rna-seq GSEA
updated 18 months ago by ★ 1.8k • written 18 months ago by ▴ 50
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1
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1.2k
views
Comment: Comment: Comparative transcriptomics
18 months ago by biology_inform ▴ 50
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0
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1.5k
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Comment: Comment: ceres score in crispr screen
21 months ago by biology_inform ▴ 50
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0
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1.5k
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Comment: Comment: ceres score in crispr screen
21 months ago by biology_inform ▴ 50
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0
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1.5k
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Comment: Comment: ceres score in crispr screen
21 months ago by biology_inform ▴ 50
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6
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1.5k
views
ceres score in crispr screen
ceres crispr ngs
updated 21 months ago by 44k • written 21 months ago by ▴ 50
1
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1
reply
656
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GSEA phenotype label file and expression data relation
GSEA
updated 2.1 years ago by 6.2k • written 2.1 years ago by ▴ 50
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1
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655
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Microarray platform download in R
R transcriptome microarray
updated 2.3 years ago by 5.0k • written 2.3 years ago by ▴ 50
1
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3
replies
983
views
Microarray analysis error
R transcriptome microarray
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 50
0
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0
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619
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Comment: Comment: gsea msigdb RNA-seq input file
2.4 years ago by biology_inform ▴ 50
1
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2
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619
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gsea msigdb RNA-seq input file
gsea rna-seq msigdb
2.4 years ago by biology_inform ▴ 50
2
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4
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2.5k
views
enhanced volcano label point
rnaseq enhancedvolcano
updated 2.4 years ago by 21k • written 2.4 years ago by ▴ 50
0
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1
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623
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gene library composition
composition rna-seq
updated 2.4 years ago by ★ 1.3k • written 2.4 years ago by ▴ 50
0
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0
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371
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Gene classification
gene classification
2.4 years ago by biology_inform ▴ 50
1
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1
reply
556
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volcano plot display selected labels
volcanoplot enhancedvolcano rna-seq
updated 2.4 years ago by 88k • written 2.4 years ago by ▴ 50
0
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1
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603
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understanding similarity in different sra files
profile expression rna-seq
updated 2.5 years ago by 14k • written 2.5 years ago by ▴ 50
0
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1
reply
985
views
WGCNA outliers
wgcna rnaseq
updated 2.5 years ago by 85k • written 2.5 years ago by ▴ 50
0
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1
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675
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wgcna without clinical traits
wgcna rnaseq
updated 2.5 years ago by 20k • written 2.5 years ago by ▴ 50
1
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6
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1.2k
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Comparative transcriptomics
rna-seq comparative transcriptomics
updated 18 months ago by 4.5k • written 2.5 years ago by ▴ 50
0
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0
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356
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similarity of transcriptome
transcriptome rna-seq
2.5 years ago by biology_inform ▴ 50
5
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2
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1.3k
views
enrichr
enrichr
updated 2.5 years ago by ▴ 450 • written 2.9 years ago by ▴ 50
0
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2
replies
2.4k
views
ggplot and DESeq2 PCA plot
ggplot pca rna-seq deseq2
updated 2.5 years ago by ★ 1.8k • written 2.5 years ago by ▴ 50
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1
reply
976
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Comment: Comment: finding coverage of bam file
2.5 years ago by biology_inform ▴ 50
0
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0
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976
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Comment: Comment: finding coverage of bam file
2.5 years ago by biology_inform ▴ 50
1
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4
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976
views
finding coverage of bam file
bam rna-seq igv
updated 2.5 years ago by 8.9k • written 2.5 years ago by ▴ 50
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0
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575
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Comment: Comment: igv and bam file
2.5 years ago by biology_inform ▴ 50
0
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2
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575
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igv and bam file
igv rna-seq bam
updated 2.4 years ago by 44k • written 2.5 years ago by ▴ 50
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2
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928
views
clusterprofiler gsea analysis
clusterprofiler gsea organism
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 50
0
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1
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1.1k
views
Comment: Comment: trimming a paired end sra
2.5 years ago by biology_inform ▴ 50
0
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1
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1.1k
views
Comment: Comment: trimming a paired end sra
2.5 years ago by biology_inform ▴ 50
1
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4
replies
1.1k
views
trimming a paired end sra
adapter fastqc rna-seq
updated 2.5 years ago by 147k • written 2.5 years ago by ▴ 50
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