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Comment: Comment: Recalculate R2 in imputed genotype data
3.4 years ago by coleman_jonathan ▴ 470
1
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0
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1.6k
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Answer: Answer: Why exactly do I need to fix ref allele using bcftools ?? [Genotype data]
3.4 years ago by coleman_jonathan ▴ 470
0
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1
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1.5k
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Comment: Comment: Simple tandem repeat (STR) reference for hg38
3.4 years ago by coleman_jonathan ▴ 470
0
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2
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932
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Recalculate R2 in imputed genotype data
vcf information imputation
3.4 years ago by coleman_jonathan ▴ 470
0
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0
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1.1k
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Excess average identical-by-descent in genotyping data
genotyping SNP gwas quality control
4.6 years ago by coleman_jonathan ▴ 470
0
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0
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1.9k
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Answer: A: Intuitive platform for mapping SNPs to eQTL's
updated 5.4 years ago by 45k • written 11.0 years ago by ▴ 470
3
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2
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6.0k
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Answer: A: GWAS on dosage data - interaction
updated 5.5 years ago by 45k • written 11.1 years ago by ▴ 470
0
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1
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2.5k
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Comment: C: Phenotype choice for one of a MZ twin pair in a genetic association study
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 470
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0
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1.8k
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Comment: C: Calculate average parental genotype
6.4 years ago by coleman_jonathan ▴ 470
2
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7
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1.8k
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Calculate average parental genotype
gwas SNP
updated 6.4 years ago by 16k • written 6.4 years ago by ▴ 470
0
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0
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1.8k
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Comment: C: Calculate average parental genotype
6.4 years ago by coleman_jonathan ▴ 470
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0
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5.2k
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Comment: C: What Are Good Values For R^2 And D' For Linkage Disequilibrium
8.3 years ago by coleman_jonathan ▴ 470
1
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0
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9.8k
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Comment: C: Ways to convert .impute2 to .mldose
8.3 years ago by coleman_jonathan ▴ 470
2
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0
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2.2k
views
Answer: A: Using family data in Mixed Linear Model Association Analyses (MLMA)
8.8 years ago by coleman_jonathan ▴ 470
4
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1
reply
2.2k
views
Using family data in Mixed Linear Model Association Analyses (MLMA)
genome GCTA MLMA family
8.8 years ago by coleman_jonathan ▴ 470
0
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0
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2.5k
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Answer: A: GWAS with few samples
8.8 years ago by coleman_jonathan ▴ 470
1
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1
reply
2.8k
views
Answer: A: awk to clip off telomeres
updated 8.8 years ago by 12k • written 8.8 years ago by ▴ 470
3
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1
reply
4.5k
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Answer: A: PRSice polygenic score with only controls
8.9 years ago by coleman_jonathan ▴ 470
0
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0
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9.8k
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Comment: C: Ways to convert .impute2 to .mldose
9.5 years ago by coleman_jonathan ▴ 470
0
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3
replies
2.5k
views
Phenotype choice for one of a MZ twin pair in a genetic association study
phenotypes gwas twins
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 470
0
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1
reply
1.9k
views
Power analysis for covariate-adjusted two sample t-test
power t-test statistics
updated 2.8 years ago by 45k • written 9.7 years ago by ▴ 470
7
votes
1
reply
21k
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Answer: Answer: Calculate z-scores from GWAS summary stats
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 470
2
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1
reply
3.4k
views
Answer: Answer: SNPRelate: how to give specific color to a population in PCA plot
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 470
1
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0
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2.2k
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Answer: Answer: Low coverage genome simulation
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 470
0
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0
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6.0k
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Answer: Answer: How to generate haplotype in PLINK ?
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 470
1
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0
replies
1.9k
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Answer: Answer: Association studies using exome sequencing
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 470
1
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1
reply
6.0k
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Comment: C: How to generate haplotype in PLINK ?
10.4 years ago by coleman_jonathan ▴ 470
3
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1
reply
10k
views
Answer: Answer: Genetic Risk Score (GRS)/ OR values
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 470
0
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2
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5.7k
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Comment: A: How to convert vcf dosage file format to mldose format?
10.4 years ago by coleman_jonathan ▴ 470
1
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1
reply
10k
views
Comment: Comment: Genetic Risk Score (GRS)/ OR values
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 470
1
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1
reply
9.8k
views
Comment: Comment: Ways to convert .impute2 to .mldose
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 470
3
votes
0
replies
2.2k
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Answer: Answer: fuzzy questions about DNA strand
updated 3.5 years ago by 45k • written 10.9 years ago by ▴ 470
5
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3
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9.8k
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Answer: A: Ways to convert .impute2 to .mldose
11.0 years ago by coleman_jonathan ▴ 470
21
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12
replies
9.8k
views
Ways to convert .impute2 to .mldose
SNP Imputation
updated 3.2 years ago by 45k • written 11.1 years ago by ▴ 470
2
votes
1
reply
1.9k
views
Power estimate for multiple timepoint expression study
power gene expression longitudinal
updated 11.0 years ago by 105k • written 11.0 years ago by ▴ 470
1
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0
replies
9.8k
views
Comment: C: Ways to convert .impute2 to .mldose
11.1 years ago by coleman_jonathan ▴ 470
0
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0
replies
9.8k
views
Comment: C: Ways to convert .impute2 to .mldose
11.1 years ago by coleman_jonathan ▴ 470
0
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0
replies
5.2k
views
Comment: C: What Are Good Values For R^2 And D' For Linkage Disequilibrium
11.9 years ago by coleman_jonathan ▴ 470
1
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2
replies
5.2k
views
Answer: A: What Are Good Values For R^2 And D' For Linkage Disequilibrium
11.9 years ago by coleman_jonathan ▴ 470
1
vote
2
replies
2.8k
views
Extracting Sample Sizes From The Nhgri Gwas Catalog
gwas
updated 11.9 years ago by ▴ 410 • written 11.9 years ago by ▴ 470
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