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0
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301
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AttributeError: module 'scvelo' has no attribute 'pp
loomfile scvelo scipy annData numpy
7 months ago by Kash ▴ 110
0
votes
3
replies
915
views
Visualize coverage across exons with varying lengths
Exons python readdepth binning
updated 2.3 years ago by 9.0k • written 2.3 years ago by ▴ 110
0
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1
reply
625
views
How do I search for miRNA target seeds using command line mirtarbase?
mirTarBase miRNAseeds
updated 2.6 years ago by ★ 2.4k • written 2.6 years ago by ▴ 110
3
votes
1
reply
694
views
MrBayes default evolutionary model
mrbayes evolutionary model
updated 3.1 years ago by ★ 28k • written 3.1 years ago by ▴ 110
0
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0
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3.7k
views
Comment: Comment: How to number of SNPs in each sample in a multi vcf file
3.2 years ago by Kash ▴ 110
0
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1
reply
252k
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Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
3.2 years ago by Kash ▴ 110
0
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1
reply
252k
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Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
3.2 years ago by Kash ▴ 110
4
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2
replies
3.7k
views
How to calculate the number of SNPs in each sample in a multi vcf file
vcf gatk multi SNP
3.2 years ago by Kash ▴ 110
0
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0
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2.7k
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Comment: Comment: Identifying Private SNPs between multi sample vcf files.
3.2 years ago by Kash ▴ 110
0
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0
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19k
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Comment: Comment: How Can I Count Snps In My Final Vcf Files
3.2 years ago by Kash ▴ 110
0
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1
reply
3.1k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.6 years ago by Kash ▴ 110
0
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1
reply
947
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How to extract regions from abed file based on variants in vcf file
vcf bed vcftools
updated 3.5 years ago by 36k • written 3.6 years ago by ▴ 110
0
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1
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3.1k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.6 years ago by Kash ▴ 110
9
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11
replies
3.1k
views
How to filter a vcf file based on genotype of first two samples
vcf genotype filter
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 110
0
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1
reply
3.1k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.6 years ago by Kash ▴ 110
0
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1
reply
3.1k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.6 years ago by Kash ▴ 110
1
vote
1
reply
1.2k
views
Understanding blast2go annotation result
combinedGOgraph annotation blast2go
updated 3.7 years ago by 101k • written 3.7 years ago by ▴ 110
0
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0
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814
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Difference between Go terms from blast hits and Interproscan in Blast2go
blast2go GO terms Interproscan Go graph
3.7 years ago by Kash ▴ 110
0
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0
replies
757
views
How to visualize sequence annotation results from Trinotate
Trinotate
3.7 years ago by Kash ▴ 110
0
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0
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631
views
What does prot_id and prot_coords represent in Trinotate output
Trinotate prot_id prot_coords
3.7 years ago by Kash ▴ 110
0
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1
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1.7k
views
Comment: C: How many nr file in NCBI nr database
3.8 years ago by Kash ▴ 110
2
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3
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1.7k
views
How many nr file in NCBI nr database
nr database
3.8 years ago by Kash ▴ 110
0
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0
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1.2k
views
Number of reads in the downloaded fastq file
SRA read count fasterq-dump vdb-dump --info
4.1 years ago by Kash ▴ 110
2
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3
replies
990
views
Does bedtools intersect output overlaps with isoforms?
bedtools isoforms
updated 4.2 years ago by 88k • written 4.2 years ago by ▴ 110
0
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0
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990
views
Comment: C: Does bedtools intersect output overlaps with isoforms?
4.2 years ago by Kash ▴ 110
0
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1
reply
4.3k
views
Comment: A: How to get input for provean from vcf files annotated by snpeff?
4.2 years ago by Kash ▴ 110
0
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1
reply
1.3k
views
expected heterozygosity, observed heterozygosity and excesshet key in vcf format
excesshet heterozygosity vcf
4.2 years ago by Kash ▴ 110
0
votes
1
reply
1.6k
views
Error while running gatk CombineGVCFs
gatk CombineGVCF USER ERROR
updated 4.3 years ago by 164k • written 4.3 years ago by ▴ 110
1
vote
1
reply
744
views
Assemble A1 and A2 reads using Trinity before running blastx on them
Assembly Trinity blastx
4.4 years ago by Kash ▴ 110
0
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0
replies
1.1k
views
Comment: C: Extracting Allele Frequencies at a set of given positions
updated 5.0 years ago by 16k • written 5.0 years ago by ▴ 110
0
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2
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1.1k
views
Extracting Allele Frequencies at a set of given positions
Allele Frequnecy VCF Whole genome DNA sequence
5.0 years ago by Kash ▴ 110
0
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0
replies
1.3k
views
Hard filtering vcf files
SNP genome variant calling hard filtering GATK
5.0 years ago by Kash ▴ 110
0
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1
reply
4.1k
views
Comment: C: What is ExcessHet key in the INFO field of a vcf file
5.2 years ago by Kash ▴ 110
1
vote
4
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4.1k
views
What is ExcessHet key in the INFO field of a vcf file
SNP next-gen sequencing
updated 5.2 years ago by ★ 1.9k • written 5.2 years ago by ▴ 110
1
vote
0
replies
1.1k
views
Comment: C: How to define output for ALT tag in vcf file
5.2 years ago by Kash ▴ 110
0
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1
reply
1.1k
views
Comment: C: How to define output for ALT tag in vcf file
5.2 years ago by Kash ▴ 110
4
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5
replies
1.1k
views
How to define output for ALT tag in vcf file
SNP next-gen sequencing
updated 5.2 years ago by 147k • written 5.2 years ago by ▴ 110
0
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0
replies
1.6k
views
Comment: C: How to use a single file as the input to MaSuRCA
5.7 years ago by Kash ▴ 110
0
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1
reply
1.6k
views
Comment: C: How to use a single file as the input to MaSuRCA
5.7 years ago by Kash ▴ 110
1
vote
4
replies
1.6k
views
How to use a single file as the input to MaSuRCA
Assembly MaSuRCA input
updated 5.7 years ago by ★ 1.4k • written 5.7 years ago by ▴ 110
0
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0
replies
1.0k
views
How to understand data in custom track of ucsc genome browsers
genome sequence UCSC genome browser custom track
5.7 years ago by Kash ▴ 110
0
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2
replies
4.4k
views
Relationship Between The Accuracy Of A Phylogenetic Tree And The Length Of The Sequences Used For Analysis
updated 6.2 years ago by 20 • written 10.9 years ago by ▴ 110
0
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0
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14k
views
Comment: C: Samtools give this error
8.4 years ago by Kash ▴ 110
0
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1
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14k
views
Comment: A: Samtools give this error
updated 8.4 years ago by 147k • written 8.4 years ago by ▴ 110
3
votes
7
replies
14k
views
Samtools give this error
Samtools
8.4 years ago by Kash ▴ 110
0
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0
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14k
views
Comment: C: Samtools give this error
8.4 years ago by Kash ▴ 110
0
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1
reply
14k
views
Comment: C: Samtools give this error
8.4 years ago by Kash ▴ 110
0
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0
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3.7k
views
Comment: C: Why 3' End Has A Lower Quality In Ngs Data
10.8 years ago by Kash ▴ 110
0
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1
reply
3.7k
views
Comment: C: Why 3' End Has A Lower Quality In Ngs Data
10.8 years ago by Kash ▴ 110
0
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4
replies
3.7k
views
Why 3' End Has A Lower Quality In Ngs Data
ngs
updated 10.8 years ago by 12k • written 10.8 years ago by ▴ 110
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