Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
4
replies
1.9k
views
Do I have to trim anything before I run MAGeCK?
MAGeCK
updated 11 weeks ago by • 0 • written 2.9 years ago by ▴ 150
0
votes
1
reply
619
views
Comment: Comment: how to calculate correlations between sparse data
3 months ago by leranwangcs ▴ 150
5
votes
6
replies
619
views
how to calculate correlations between sparse data
Correlations
updated 3 months ago by ★ 28k • written 3 months ago by ▴ 150
0
votes
1
reply
695
views
Using adonis to include a random effect
mixed-model adonis
updated 7 months ago by 4.5k • written 7 months ago by ▴ 150
1
vote
3
replies
828
views
how to get the variance explained by the independent variable from multivariate distance matrix regression model with random effect?
multivariate-distance-matrix regression
updated 7 months ago by 4.5k • written 7 months ago by ▴ 150
0
votes
0
replies
828
views
Comment: Comment: how to get the variance explained by the independent variable from multivariate
7 months ago by leranwangcs ▴ 150
0
votes
0
replies
485
views
Comment: Comment: CCA with random effects model
7 months ago by leranwangcs ▴ 150
1
vote
3
replies
485
views
CCA with random effects model
CCA
updated 7 months ago by 15k • written 7 months ago by ▴ 150
0
votes
0
replies
299
views
DESeq stats or Wilcoxon auc scores as input in pathway analysis
pathway-analysis
updated 8 months ago by 44k • written 8 months ago by ▴ 150
0
votes
0
replies
792
views
Comment: Comment: how to get entrez IDs from wormbase gene IDs
8 months ago by leranwangcs ▴ 150
0
votes
0
replies
792
views
Comment: Comment: how to get entrez IDs from wormbase gene IDs
8 months ago by leranwangcs ▴ 150
2
votes
6
replies
792
views
how to get entrez IDs from wormbase gene IDs
wormbase
8 months ago by leranwangcs ▴ 150
0
votes
1
reply
792
views
Comment: Comment: how to get entrez IDs from wormbase gene IDs
9 months ago by leranwangcs ▴ 150
0
votes
0
replies
570
views
Comment: Comment: Annotate wormbase genes
10 months ago by leranwangcs ▴ 150
1
vote
3
replies
570
views
Annotate wormbase genes
RNA-seq
9 months ago by leranwangcs ▴ 150
0
votes
0
replies
918
views
Comment: Comment: RNAseq analysis: how to add new gene into an existing worm based reference
10 months ago by leranwangcs ▴ 150
0
votes
0
replies
918
views
Comment: Comment: RNAseq analysis: how to add new gene into an existing worm based reference
10 months ago by leranwangcs ▴ 150
1
vote
6
replies
918
views
RNAseq analysis: how to add new gene into an existing worm based reference
RNA-seq
updated 10 months ago by ▴ 190 • written 10 months ago by ▴ 150
4
votes
1
reply
910
views
How to interpret Clustree results?
scRNA clustering clustree
updated 15 months ago by 4.5k • written 15 months ago by ▴ 150
6
votes
1
reply
3.0k
views
How does FindNeighbors() and FindClusters() related and work?
seurat clustering
updated 15 months ago by ★ 3.0k • written 15 months ago by ▴ 150
0
votes
0
replies
1.4k
views
Comment: Comment: t-SNE plot dots that are close together assigned to different clusters.
15 months ago by leranwangcs ▴ 150
4
votes
6
replies
1.4k
views
6 follow
t-SNE plot dots that are close together assigned to different clusters.
scRNA clustering
updated 15 months ago by 4.5k • written 15 months ago by ▴ 150
0
votes
1
reply
1.4k
views
Comment: Comment: TSNE plot dots that are close together assigned to different clusters.
15 months ago by leranwangcs ▴ 150
0
votes
2
replies
2.0k
views
Cannot color cells with 0 expression in certain color
Seurat scRNA
updated 2.2 years ago by ▴ 10 • written 3.6 years ago by ▴ 150
0
votes
0
replies
1.1k
views
Comment: Comment: fluteRRA() error: URL 'https://s3-eu-west-1.amazonaws.com....Timeout of 60 secon
2.3 years ago by leranwangcs ▴ 150
2
votes
3
replies
1.4k
views
RNASeq data has 3 files R1, R2 and R3, which one is the barcode file?
RNASeq
updated 2.4 years ago by 147k • written 2.4 years ago by ▴ 150
0
votes
1
reply
1.2k
views
Comment: Comment: different number of samples from each individual
2.5 years ago by leranwangcs ▴ 150
0
votes
0
replies
1.2k
views
Comment: Comment: different number of samples from each individual
2.5 years ago by leranwangcs ▴ 150
0
votes
5
replies
1.2k
views
different number of samples from each individual
statistics
updated 2.5 years ago by 88k • written 2.5 years ago by ▴ 150
0
votes
0
replies
1.2k
views
Error in (function (edges, n = max(edges), directed = TRUE) : At type_indexededgelist.c:117 : cannot create empty graph with negative number of v…
tidygraph
2.6 years ago by leranwangcs ▴ 150
1
vote
1
reply
1.9k
views
Seurat subset cluster cell annotation
Seurat
updated 2.8 years ago by ★ 1.1k • written 2.8 years ago by ▴ 150
0
votes
4
replies
1.3k
views
DESeq confusing results
DESeq
updated 2.9 years ago by 10k • written 2.9 years ago by ▴ 150
0
votes
1
reply
1.3k
views
Comment: Comment: DESeq confusing results
2.9 years ago by leranwangcs ▴ 150
0
votes
1
reply
1.9k
views
Comment: Comment: Do I have to trim anything before I run MAGeCK?
2.9 years ago by leranwangcs ▴ 150
0
votes
1
reply
3.1k
views
Comment: Comment: How to get normalized count table from DESeq?
3.0 years ago by leranwangcs ▴ 150
3
votes
5
replies
3.1k
views
How to get normalized count table from DESeq?
DESeq
updated 3.0 years ago by 85k • written 3.0 years ago by ▴ 150
2
votes
4
replies
1.3k
views
How to know if certain gene is highly expressed compared to some common housekeeping gene in a cell line?
expression gene
updated 3.0 years ago by ★ 18k • written 3.0 years ago by ▴ 150
0
votes
1
reply
1.3k
views
Comment: Comment: How to know if certain gene is highly expressed compared to some common housekee
3.0 years ago by leranwangcs ▴ 150
0
votes
2
replies
1.1k
views
fluteRRA() error: URL 'https://s3-eu-west-1.amazonaws.com....Timeout of 60 seconds was reached
MAGeCK
2.3 years ago by leranwangcs ▴ 150
0
votes
1
reply
1.3k
views
Comment: Comment: Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
3.1 years ago by leranwangcs ▴ 150
2
votes
3
replies
1.3k
views
Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
CRISPR
updated 3.1 years ago by ▴ 160 • written 3.1 years ago by ▴ 150
1
vote
1
reply
1.1k
views
Can SingleR be reused to identify cell types after subsetting the original Seurat Object
scRNA
updated 3.2 years ago by ★ 18k • written 3.2 years ago by ▴ 150
0
votes
0
replies
787
views
PC p values in JackStrawPlot in Seurat are not in order
scRNA
3.2 years ago by leranwangcs ▴ 150
0
votes
0
replies
5.6k
views
Comment: Comment: Seurat re-clustering a cell subset but cell identity numbers are not completely
3.2 years ago by leranwangcs ▴ 150
2
votes
3
replies
5.6k
views
Seurat re-clustering a cell subset but cell identity numbers are not completely showing up
scRNA
3.2 years ago by leranwangcs ▴ 150
0
votes
0
replies
5.6k
views
Comment: Comment: Seurat re-clustering a cell subset but cell identity numbers are not completely
3.3 years ago by leranwangcs ▴ 150
0
votes
0
replies
921
views
Comment: Comment: how to identify if a contig.fa file comes from IDBA or Spades?
3.5 years ago by leranwangcs ▴ 150
1
vote
2
replies
921
views
how to identify if a contig.fa file comes from IDBA or Spades?
assembler
3.5 years ago by leranwangcs ▴ 150
0
votes
3
replies
2.0k
views
customized gene not show in the output from cellranger count even if I have added to the reference genome database
gene scRNA cellranger
updated 3.6 years ago by ▴ 40 • written 3.6 years ago by ▴ 150
0
votes
0
replies
2.0k
views
Comment: Comment: customized gene not show in the output from cellranger count even if I have adde
3.6 years ago by leranwangcs ▴ 150
72 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6