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Comment: Comment: 2021: state and usage of compressed file standards better than BAM and FASTQ
2.4 years ago by quentin54520 ▴ 120
10
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11
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4.9k
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Read bam/cram file with IGV from aws s3
s3 IGV aws amazon
2.4 years ago by quentin54520 ▴ 120
2
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0
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4.9k
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Answer: Answer: Read bam/cram file with IGV from aws s3
2.4 years ago by quentin54520 ▴ 120
0
votes
1
reply
483
views
Tools for rare variant burden analysis
variant-burden
updated 17 months ago by 44k • written 2.6 years ago by ▴ 120
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1
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2.2k
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Comment: Comment: Annotations vep : keep high impact in any transcript + canonical
2.6 years ago by quentin54520 ▴ 120
5
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7
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2.2k
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Annotations vep : keep high impact in any transcript + canonical
annotations Vep ensembl
updated 2.6 years ago by 44k • written 2.6 years ago by ▴ 120
0
votes
1
reply
520
views
Vcf stat about consequences
Vcf vep statistic
updated 2.7 years ago by 88k • written 2.7 years ago by ▴ 120
4
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7
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1.4k
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Vcf : remove variant absent in affected sample
Vcf
updated 2.7 years ago by ▴ 480 • written 2.7 years ago by ▴ 120
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0
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1.4k
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Comment: Comment: Vcf : remove variant absent in affected sample
2.7 years ago by quentin54520 ▴ 120
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1
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1.4k
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Comment: Comment: Vcf : remove variant absent in affected sample
2.7 years ago by quentin54520 ▴ 120
0
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1
reply
1.4k
views
Comment: Comment: Vcf : remove variant absent in affected sample
2.7 years ago by quentin54520 ▴ 120
0
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0
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736
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Comment: Comment: Ensembl VEP on aws
2.7 years ago by quentin54520 ▴ 120
0
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2
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736
views
Ensembl VEP on aws
Vep aws ensembl
2.7 years ago by quentin54520 ▴ 120
0
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1
reply
533
views
RNA-seq alignment in 2 pass mode
RNA-seq alignment 2-PASS
updated 2.7 years ago by ▴ 830 • written 2.7 years ago by ▴ 120
1
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5
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2.0k
views
Samtools on arm / aws
Samtools arm aws
updated 2.8 years ago by ▴ 340 • written 2.8 years ago by ▴ 120
1
vote
1
reply
826
views
Dragen joint genotyping
genotyping Dragen joint-genotyping wgs
updated 2.2 years ago by 22k • written 2.8 years ago by ▴ 120
0
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0
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4.9k
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Comment: Comment: Read bam/cram file with IGV from aws s3
2.8 years ago by quentin54520 ▴ 120
0
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1
reply
4.9k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
2.9 years ago by quentin54520 ▴ 120
0
votes
1
reply
4.9k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
2.9 years ago by quentin54520 ▴ 120
0
votes
1
reply
4.9k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
2.9 years ago by quentin54520 ▴ 120
1
vote
1
reply
887
views
Basespace illumina how to use ?
wgs Basespace illumina
updated 2.9 years ago by 147k • written 2.9 years ago by ▴ 120
1
vote
4
replies
2.2k
views
Dragen-gatk for trio
Gatk germline dragen
updated 2.9 years ago by 21k • written 3.0 years ago by ▴ 120
0
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0
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2.2k
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Answer: Answer: Dragen-gatk for trio
2.9 years ago by quentin54520 ▴ 120
0
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0
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644
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Gatk pipeline wdl on multiples sample input
Gatk germline
3.0 years ago by quentin54520 ▴ 120
1
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1
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1.0k
views
Vep : MNP phased genotype
mnp Vep phased
updated 3.2 years ago by ★ 2.4k • written 3.2 years ago by ▴ 120
0
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0
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2.3k
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Comment: Comment: Alamut batch vs free annotation tools like VEP
3.2 years ago by quentin54520 ▴ 120
1
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1
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3.0k
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Answer: Answer: Ensembl vep singularity
3.2 years ago by quentin54520 ▴ 120
0
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3
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2.3k
views
Alamut batch vs free annotation tools like VEP
genome
updated 2.1 years ago by • 0 • written 3.8 years ago by ▴ 120
0
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0
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3.0k
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Comment: Comment: Ensembl vep singularity
3.2 years ago by quentin54520 ▴ 120
0
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1
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3.0k
views
Comment: Comment: Ensembl vep singularity
3.2 years ago by quentin54520 ▴ 120
1
vote
7
replies
3.0k
views
Ensembl vep singularity
vep ensembl Singularity
updated 17 months ago by ★ 2.4k • written 3.2 years ago by ▴ 120
0
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1
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1.3k
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Comment: Comment: Dragen-gatk pipeline information ?
3.2 years ago by quentin54520 ▴ 120
0
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3
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1.3k
views
Dragen-gatk pipeline information ?
germline gatk dragen wgs
updated 3.2 years ago by ★ 2.9k • written 3.2 years ago by ▴ 120
0
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0
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1.5k
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Comment: Comment: MarkduplicatesSpark How to speed-up ?
3.3 years ago by quentin54520 ▴ 120
0
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0
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1.5k
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Comment: Comment: MarkduplicatesSpark How to speed-up ?
3.3 years ago by quentin54520 ▴ 120
0
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3
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1.5k
views
MarkduplicatesSpark How to speed-up ?
spark gatk genome
3.3 years ago by quentin54520 ▴ 120
1
vote
1
reply
807
views
GATK VQSR for human WGS
WGS alignment genome
updated 3.3 years ago by ▴ 260 • written 3.4 years ago by ▴ 120
0
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0
replies
445
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Germline calling with differents sample source
WGS alignment genome
3.4 years ago by quentin54520 ▴ 120
0
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0
replies
1.2k
views
Comment: Comment: Filter bam file AND header
3.4 years ago by quentin54520 ▴ 120
0
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1
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1.2k
views
Comment: Comment: Filter bam file AND header
3.4 years ago by quentin54520 ▴ 120
1
vote
4
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1.2k
views
Filter bam file AND header
filter header BAM
3.4 years ago by quentin54520 ▴ 120
0
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1
reply
905
views
Comment: Comment: Ngs : how check if two samples come frome the same family?
3.4 years ago by quentin54520 ▴ 120
3
votes
3
replies
905
views
Ngs : how check if two samples come frome the same family?
exome family Genome
updated 3.4 years ago by 85k • written 3.4 years ago by ▴ 120
0
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0
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1.3k
views
Comment: Comment: gVCF size human genome
3.4 years ago by quentin54520 ▴ 120
3
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2
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1.3k
views
gVCF size human genome
variant Gatk gvcf
3.4 years ago by quentin54520 ▴ 120
0
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0
replies
945
views
HaplotypeCaller run time ?
WGS Haplotypecaller GATK
3.5 years ago by quentin54520 ▴ 120
0
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1
reply
2.2k
views
Comment: Comment: HaplotypeCallerSpark
3.7 years ago by quentin54520 ▴ 120
1
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4
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2.2k
views
HaplotypeCallerSpark
Variant gatk haplotypecaller
updated 2.7 years ago by • 0 • written 3.7 years ago by ▴ 120
0
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0
replies
845
views
SAM: why NM and MD tag are changed by the picard tool SetNmMdandUqtag ?
alignment gatk sam
3.7 years ago by quentin54520 ▴ 120
0
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0
replies
869
views
Should i calculated Nm, UQ and MD tag of bam ?
alignment bam gatk
3.7 years ago by quentin54520 ▴ 120
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