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0
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4.3k
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Comment: Comment: 2021: state and usage of compressed file standards better than BAM and FASTQ
2.7 years ago by quentin54520 ▴ 120
10
votes
11
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5.6k
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6 follow
Read bam/cram file with IGV from aws s3
s3 IGV aws amazon
2.8 years ago by quentin54520 ▴ 120
2
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0
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5.6k
views
Answer: Answer: Read bam/cram file with IGV from aws s3
2.8 years ago by quentin54520 ▴ 120
0
votes
1
reply
530
views
Tools for rare variant burden analysis
variant-burden
updated 21 months ago by 45k • written 3.0 years ago by ▴ 120
0
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1
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2.6k
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Comment: Comment: Annotations vep : keep high impact in any transcript + canonical
3.0 years ago by quentin54520 ▴ 120
5
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7
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2.6k
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Annotations vep : keep high impact in any transcript + canonical
annotations Vep ensembl
updated 3.0 years ago by 45k • written 3.0 years ago by ▴ 120
0
votes
1
reply
594
views
Vcf stat about consequences
Vcf vep statistic
updated 3.0 years ago by 89k • written 3.0 years ago by ▴ 120
4
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7
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1.7k
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Vcf : remove variant absent in affected sample
Vcf
updated 3.1 years ago by ▴ 480 • written 3.1 years ago by ▴ 120
0
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0
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1.7k
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Comment: Comment: Vcf : remove variant absent in affected sample
3.1 years ago by quentin54520 ▴ 120
0
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1
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1.7k
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Comment: Comment: Vcf : remove variant absent in affected sample
3.1 years ago by quentin54520 ▴ 120
0
votes
1
reply
1.7k
views
Comment: Comment: Vcf : remove variant absent in affected sample
3.1 years ago by quentin54520 ▴ 120
0
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0
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841
views
Comment: Comment: Ensembl VEP on aws
3.1 years ago by quentin54520 ▴ 120
0
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2
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841
views
Ensembl VEP on aws
Vep aws ensembl
3.1 years ago by quentin54520 ▴ 120
0
votes
1
reply
583
views
RNA-seq alignment in 2 pass mode
RNA-seq alignment 2-PASS
updated 3.1 years ago by ▴ 840 • written 3.1 years ago by ▴ 120
1
vote
5
replies
2.1k
views
Samtools on arm / aws
Samtools arm aws
updated 3.2 years ago by ▴ 370 • written 3.2 years ago by ▴ 120
1
vote
1
reply
933
views
Dragen joint genotyping
genotyping Dragen joint-genotyping wgs
updated 2.6 years ago by 23k • written 3.2 years ago by ▴ 120
0
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0
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5.6k
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Comment: Comment: Read bam/cram file with IGV from aws s3
3.2 years ago by quentin54520 ▴ 120
0
votes
1
reply
5.6k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
3.2 years ago by quentin54520 ▴ 120
0
votes
1
reply
5.6k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
3.2 years ago by quentin54520 ▴ 120
0
votes
1
reply
5.6k
views
Comment: Comment: Read bam/cram file with IGV from aws s3
3.2 years ago by quentin54520 ▴ 120
1
vote
1
reply
980
views
Basespace illumina how to use ?
wgs Basespace illumina
updated 3.3 years ago by 150k • written 3.3 years ago by ▴ 120
1
vote
4
replies
2.5k
views
Dragen-gatk for trio
Gatk germline dragen
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 120
0
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0
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2.5k
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Answer: Answer: Dragen-gatk for trio
3.3 years ago by quentin54520 ▴ 120
0
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0
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700
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Gatk pipeline wdl on multiples sample input
Gatk germline
3.3 years ago by quentin54520 ▴ 120
1
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1
reply
1.2k
views
Vep : MNP phased genotype
mnp Vep phased
updated 3.5 years ago by ★ 2.4k • written 3.5 years ago by ▴ 120
0
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0
replies
2.5k
views
Comment: Comment: Alamut batch vs free annotation tools like VEP
3.5 years ago by quentin54520 ▴ 120
1
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1
reply
3.3k
views
Answer: Answer: Ensembl vep singularity
3.5 years ago by quentin54520 ▴ 120
0
votes
3
replies
2.5k
views
Alamut batch vs free annotation tools like VEP
genome
updated 2.4 years ago by • 0 • written 4.1 years ago by ▴ 120
0
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0
replies
3.3k
views
Comment: Comment: Ensembl vep singularity
3.5 years ago by quentin54520 ▴ 120
0
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1
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3.3k
views
Comment: Comment: Ensembl vep singularity
3.5 years ago by quentin54520 ▴ 120
1
vote
7
replies
3.3k
views
Ensembl vep singularity
vep ensembl Singularity
updated 22 months ago by ★ 2.4k • written 3.5 years ago by ▴ 120
0
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1
reply
1.5k
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Comment: Comment: Dragen-gatk pipeline information ?
3.6 years ago by quentin54520 ▴ 120
0
votes
3
replies
1.5k
views
Dragen-gatk pipeline information ?
germline gatk dragen wgs
updated 3.6 years ago by ★ 3.0k • written 3.6 years ago by ▴ 120
0
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0
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1.7k
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Comment: Comment: MarkduplicatesSpark How to speed-up ?
3.6 years ago by quentin54520 ▴ 120
0
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0
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1.7k
views
Comment: Comment: MarkduplicatesSpark How to speed-up ?
3.6 years ago by quentin54520 ▴ 120
0
votes
3
replies
1.7k
views
MarkduplicatesSpark How to speed-up ?
spark gatk genome
3.6 years ago by quentin54520 ▴ 120
1
vote
1
reply
891
views
GATK VQSR for human WGS
WGS alignment genome
updated 3.7 years ago by ▴ 270 • written 3.7 years ago by ▴ 120
0
votes
0
replies
484
views
Germline calling with differents sample source
WGS alignment genome
3.7 years ago by quentin54520 ▴ 120
0
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0
replies
1.4k
views
Comment: Comment: Filter bam file AND header
3.7 years ago by quentin54520 ▴ 120
0
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1
reply
1.4k
views
Comment: Comment: Filter bam file AND header
3.7 years ago by quentin54520 ▴ 120
1
vote
4
replies
1.4k
views
Filter bam file AND header
filter header BAM
3.7 years ago by quentin54520 ▴ 120
0
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1
reply
1.0k
views
Comment: Comment: Ngs : how check if two samples come frome the same family?
3.8 years ago by quentin54520 ▴ 120
3
votes
3
replies
1.0k
views
Ngs : how check if two samples come frome the same family?
exome family Genome
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 120
0
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0
replies
1.4k
views
Comment: Comment: gVCF size human genome
3.8 years ago by quentin54520 ▴ 120
3
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2
replies
1.4k
views
gVCF size human genome
variant Gatk gvcf
3.8 years ago by quentin54520 ▴ 120
0
votes
0
replies
1.0k
views
HaplotypeCaller run time ?
WGS Haplotypecaller GATK
3.9 years ago by quentin54520 ▴ 120
0
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1
reply
2.4k
views
Comment: Comment: HaplotypeCallerSpark
4.0 years ago by quentin54520 ▴ 120
1
vote
4
replies
2.4k
views
HaplotypeCallerSpark
Variant gatk haplotypecaller
updated 3.0 years ago by • 0 • written 4.0 years ago by ▴ 120
0
votes
0
replies
909
views
SAM: why NM and MD tag are changed by the picard tool SetNmMdandUqtag ?
alignment gatk sam
4.0 years ago by quentin54520 ▴ 120
0
votes
0
replies
938
views
Should i calculated Nm, UQ and MD tag of bam ?
alignment bam gatk
4.1 years ago by quentin54520 ▴ 120
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