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3
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0
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3.2k
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Answer: A: GC content of promoters
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 270
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0
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2.6k
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Comment: C: Clustering of enhancer sites!!
updated 4.9 years ago by 44k • written 10.6 years ago by ▴ 270
1
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0
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2.6k
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Answer: A: Clustering of enhancer sites!!
updated 4.9 years ago by 44k • written 10.6 years ago by ▴ 270
0
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1
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14k
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Comment: A: Plotting Read Density/ Distribution/ Composite Profiles [Chip-Seq]
updated 4.9 years ago by 44k • written 10.6 years ago by ▴ 270
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6.2k
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Comment: C: Aggregating Gene Expression Across Rows
updated 4.9 years ago by 44k • written 10.1 years ago by ▴ 270
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1
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1.7k
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Answer: A: how to merge different peak sparse matrices
5.8 years ago by aditi.qamra ▴ 270
1
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1
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2.6k
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Comment: C: ballgown has "." as Gene Names
5.9 years ago by aditi.qamra ▴ 270
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0
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911
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Answer: A: Do some cancer type data in RTCGA cannot be downloaded?
5.9 years ago by aditi.qamra ▴ 270
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0
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1.0k
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Answer: A: compute genome composition (total amount of introns/exons etc)
5.9 years ago by aditi.qamra ▴ 270
1
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1
reply
1.7k
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Comment: C: Protist in UniProt/NCBI taxonomic tree
5.9 years ago by aditi.qamra ▴ 270
1
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1
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2.6k
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Comment: A: ballgown has "." as Gene Names
5.9 years ago by aditi.qamra ▴ 270
0
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0
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2.6k
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Comment: C: Mismatch number of reads after bedtools bam2fastq on RNA-seq data
6.4 years ago by aditi.qamra ▴ 270
0
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0
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2.6k
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Comment: C: Mismatch number of reads after bedtools bam2fastq on RNA-seq data
6.4 years ago by aditi.qamra ▴ 270
1
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4
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2.6k
views
Mismatch number of reads after bedtools bam2fastq on RNA-seq data
RNA-Seq alignment
updated 6.4 years ago by 5.9k • written 6.4 years ago by ▴ 270
0
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1
reply
4.7k
views
Combined Tss Plots For Chip Seq Peaks
chip-seq
updated 6.4 years ago by 20 • written 10.7 years ago by ▴ 270
1
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1
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2.2k
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Comment: C: Explain fig. 5 c of "The impact of rare variation on gene expression across tiss
7.1 years ago by aditi.qamra ▴ 270
1
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0
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2.2k
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Comment: C: Explain fig. 5 c of "The impact of rare variation on gene expression across tiss
7.1 years ago by aditi.qamra ▴ 270
0
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0
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2.1k
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Answer: A: Different BAM files generated using different commands in bash - which one is ri
7.1 years ago by aditi.qamra ▴ 270
0
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0
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1.4k
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Answer: A: Classifying DEGs based on the tissue where it is expressed
7.1 years ago by aditi.qamra ▴ 270
1
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1
reply
3.9k
views
Batch correction for TCGA 450K data
dna-methylation TCGA 450k
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 270
2
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0
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1.5k
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Comment: A: Get number of hits programatically for a advanced query search in UniprotKb
7.6 years ago by aditi.qamra ▴ 270
0
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0
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2.0k
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Comment: A: How identify zero fold degradation sites
7.6 years ago by aditi.qamra ▴ 270
0
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1
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5.6k
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Comment: C: Cuffdiff takes extremely long time at "Testing for differential expression and r
8.3 years ago by aditi.qamra ▴ 270
1
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1
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5.6k
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Comment: C: Cuffdiff takes extremely long time at "Testing for differential expression and r
8.3 years ago by aditi.qamra ▴ 270
1
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1
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5.6k
views
Comment: C: Cuffdiff takes extremely long time at "Testing for differential expression and r
8.3 years ago by aditi.qamra ▴ 270
1
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1
reply
5.6k
views
Answer: A: Cuffdiff takes extremely long time at "Testing for differential expression and r
8.3 years ago by aditi.qamra ▴ 270
0
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1
reply
2.2k
views
Comment: C: Protein Sequence identifier to use after annotating variants (Swissprot or Unipa
8.4 years ago by aditi.qamra ▴ 270
0
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3
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2.2k
views
Protein Sequence identifier to use after annotating variants (Swissprot or Uniparc) ?
vep uniprot ensembl
updated 8.4 years ago by ★ 2.4k • written 8.4 years ago by ▴ 270
0
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1
reply
4.3k
views
Answer: A: Getting subtypes of cancer from TCGA
8.4 years ago by aditi.qamra ▴ 270
0
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1
reply
12k
views
Comment: A: Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
updated 8.4 years ago by 147k • written 8.4 years ago by ▴ 270
2
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1
reply
6.6k
views
Comment: Comment: histone mark associated with enhancers
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 270
1
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1
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6.6k
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Answer: A: histone mark associated with enhancers
10.0 years ago by aditi.qamra ▴ 270
1
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0
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2.9k
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Comment: Comment: Request for sites which are not promoter and enhancer as negative data for class
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 270
9
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9
replies
5.6k
views
Transcript support level in Gencode gtf v19
gencode annotation gtf
updated 2.4 years ago by 44k • written 10.0 years ago by ▴ 270
0
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0
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7.3k
views
Comment: Comment: GSEA Error Message - "Dataset not set"
updated 2.9 years ago by 44k • written 10.0 years ago by ▴ 270
0
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1
reply
2.9k
views
Comment: C: Request for sites which are not promoter and enhancer as negative data for class
10.0 years ago by aditi.qamra ▴ 270
1
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3
replies
7.3k
views
GSEA Error Message - "Dataset not set"
GSEA
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 270
1
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1
reply
2.9k
views
Comment: Comment: Request for sites which are not promoter and enhancer as negative data for class
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 270
0
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1
reply
5.6k
views
Comment: Comment: Transcript support level in Gencode gtf v19
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 270
1
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0
replies
5.6k
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Comment: Comment: Transcript support level in Gencode gtf v19
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 270
1
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1
reply
2.9k
views
Answer: Answer: Request for sites which are not promoter and enhancer as negative data for class
updated 2.8 years ago by 44k • written 10.0 years ago by ▴ 270
4
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3
replies
2.6k
views
Exons in Refseq-hg19
gene
updated 3.7 years ago by 44k • written 10.1 years ago by ▴ 270
1
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0
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7.3k
views
Answer: Answer: GSEA Error Message - "Dataset not set"
updated 2.9 years ago by 44k • written 10.1 years ago by ▴ 270
0
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0
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4.4k
views
Comment: C: How to generate pretty bedgraph tracks ( publication quality)
10.3 years ago by aditi.qamra ▴ 270
1
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2
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4.4k
views
How to generate pretty bedgraph tracks ( publication quality)
visualisation bedgraphs
updated 10.3 years ago by 164k • written 10.3 years ago by ▴ 270
0
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0
replies
3.4k
views
Comment: Comment: Represent expression values
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 270
0
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1
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3.4k
views
Answer: Answer: Represent expression values
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 270
0
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1
reply
4.8k
views
Comment: C: Calculate complete Splicing Index (coSI) for exons
10.4 years ago by aditi.qamra ▴ 270
1
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3
replies
4.8k
views
Calculate complete Splicing Index (coSI) for exons
RNA-Seq
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 270
2
votes
3
replies
2.7k
views
Different annotation gtf file in Tophat2 and Cufflink
RNA-Seq
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 270
64 results • Page 1 of 2
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