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Comment: Comment: ATAC-seq peaks centered between TSS and TES
6 weeks ago by buffealo ▴ 130
0
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0
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752
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Comment: Comment: ATAC-seq peaks centered between TSS and TES
6 weeks ago by buffealo ▴ 130
0
votes
1
reply
752
views
Comment: Comment: ATAC-seq peaks centered between TSS and TES
6 weeks ago by buffealo ▴ 130
0
votes
0
replies
752
views
Comment: Comment: ATAC-seq peaks centered between TSS and TES
6 weeks ago by buffealo ▴ 130
5
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8
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752
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ATAC-seq peaks centered between TSS and TES
compute-matrix atac atac-seq tss-enrichment enrichment-graph
6 weeks ago by buffealo ▴ 130
0
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0
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220
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Comment: Comment: DiffBind count function error related with BiocParallel and IRanges
7 weeks ago by buffealo ▴ 130
0
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1
reply
220
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DiffBind count function error related with BiocParallel and IRanges
dba chipseq iranges diffbind
7 weeks ago by buffealo ▴ 130
0
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0
replies
464
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mageckflute scatterview not labeling centric genes
crispr scatterview mageckflute mageck analysis
15 months ago by buffealo ▴ 130
0
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0
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804
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Comment: Comment: so many zero p-values resulted from mageck mle
15 months ago by buffealo ▴ 130
2
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2
replies
804
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so many zero p-values resulted from mageck mle
crispr mle mageck analysis
15 months ago by buffealo ▴ 130
0
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1
reply
3.2k
views
Answer: Answer: DiffBind dba.count() BiocParallel error
2.6 years ago by buffealo ▴ 130
0
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2
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5.8k
views
"Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'assay': subscript out of bounds" erro…
countingpeaks diffbind chipseq
updated 2.3 years ago by ★ 2.1k • written 2.6 years ago by ▴ 130
0
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0
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4.1k
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Comment: Comment: Why ranges of narrowPeak file and that of bed file are not identical
3.0 years ago by buffealo ▴ 130
0
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1
reply
3.1k
views
Comment: Comment: merging .narrowPeak files with all of the columns they have
3.0 years ago by buffealo ▴ 130
0
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1
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3.1k
views
Comment: Comment: merging .narrowPeak files with all of the columns they have
3.0 years ago by buffealo ▴ 130
0
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1
reply
3.1k
views
Comment: Comment: merging .narrowPeak files with all of the columns they have
3.0 years ago by buffealo ▴ 130
2
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7
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3.1k
views
merging .narrowPeak files with all of the columns they have
merging overlappinpeaks mergingchipseq narrowpeak chipseq
updated 3.0 years ago by ▴ 810 • written 3.0 years ago by ▴ 130
0
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0
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955
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Comment: Comment: Publicly Available ChIP-seq Samples Does not Overlap
3.0 years ago by buffealo ▴ 130
1
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3
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955
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Publicly Available ChIP-seq Samples Does not Overlap
publicdata chipseq overlappinpeaks chipseqoverlap
3.0 years ago by buffealo ▴ 130
0
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0
replies
2.8k
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Comment: Comment: ChIP-seq heatmap input bed file
3.0 years ago by buffealo ▴ 130
0
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1
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2.8k
views
Comment: Comment: ChIP-seq heatmap input bed file
3.0 years ago by buffealo ▴ 130
4
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5
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2.8k
views
ChIP-seq heatmap input bed file
bed chip-seq deeptools heatmap
updated 14 months ago by • 0 • written 3.0 years ago by ▴ 130
2
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0
replies
1.2k
views
difference between treat_pileup and bdgcmp fold enrichment tracks macs2
chipseq chipsignals chipseqtracks chipseqanalysis IGVtracks
3.2 years ago by buffealo ▴ 130
0
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0
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43k
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Comment: Comment: How to extract unique mapped results from Bowtie2 bam results?
3.2 years ago by buffealo ▴ 130
2
votes
2
replies
1.4k
views
not primary alignment flag filtering does not work
filtering samtools chipsamples chipseq chipseqanalysis
updated 3.1 years ago by ★ 1.3k • written 3.2 years ago by ▴ 130
0
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0
replies
1.0k
views
Comment: Comment: ChIP-seq peak number so high
3.2 years ago by buffealo ▴ 130
0
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3
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1.0k
views
ChIP-seq peak number so high
chipsamples peaknumber chipseq chipseqpeaks chipseqanalysis
3.2 years ago by buffealo ▴ 130
1
vote
0
replies
543
views
How to proceed with multiple runs ChIP-seq
chipsamples seqruns chipseq sequencing chipseqanalysis
3.2 years ago by buffealo ▴ 130
0
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1
reply
1.4k
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Comment: Comment: Direct - indirect binding of a transcription factor in chip-seq analysis
3.3 years ago by buffealo ▴ 130
0
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1
reply
1.4k
views
Comment: Comment: Direct - indirect binding of a transcription factor in chip-seq analysis
3.3 years ago by buffealo ▴ 130
5
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5
replies
1.4k
views
Direct - indirect binding of a transcription factor in chip-seq analysis
directbinding indirectbinding trancriptionfactors chipseq chipseqanalysis
updated 3.3 years ago by ▴ 500 • written 3.3 years ago by ▴ 130
0
votes
1
reply
527
views
Choosing the right sample among GEO datasets
GEOdatasets chipsamples celllinesamples chipseq chipseqanalysis
updated 3.3 years ago by 85k • written 3.3 years ago by ▴ 130
3
votes
3
replies
3.0k
views
narrowPeak or summits.bed for HOMER motif finding
motif motiffinding homer macs bedformat
updated 3.5 years ago by ★ 1.6k • written 3.5 years ago by ▴ 130
0
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1
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1.2k
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Comment: Comment: MACS2 does not giving same result before and after chromosome extraction from ba
3.5 years ago by buffealo ▴ 130
2
votes
3
replies
1.2k
views
MACS2 does not giving same result before and after chromosome extraction from bam file
chromosome samtools extract peakcalling macs2
updated 3.5 years ago by 11k • written 3.5 years ago by ▴ 130
0
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0
replies
1.1k
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Comment: Comment: ChIP-seq correlation with CNS
3.5 years ago by buffealo ▴ 130
0
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0
replies
742
views
Comment: Comment: HOMER peak-motif relationship as direct-indirect binding
3.5 years ago by buffealo ▴ 130
0
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1
reply
1.1k
views
Comment: Comment: ChIP-seq correlation with CNS
3.5 years ago by buffealo ▴ 130
0
votes
2
replies
742
views
HOMER peak-motif relationship as direct-indirect binding
homermotif directbinding indirectbinding
3.5 years ago by buffealo ▴ 130
0
votes
4
replies
1.1k
views
ChIP-seq correlation with CNS
cnv segmented chip
3.5 years ago by buffealo ▴ 130
0
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1
reply
3.0k
views
Comment: Comment: narrowPeak or summits.bed for HOMER motif finding
3.5 years ago by buffealo ▴ 130
0
votes
0
replies
593
views
HOMER average conservation information
homermotif peaks chip-seq annotation motifanalysis
3.5 years ago by buffealo ▴ 130
0
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0
replies
886
views
Comment: Comment: UCSC "chromEnd larger than chrom chr21 size (46750259 > 46709983)" error
3.5 years ago by buffealo ▴ 130
2
votes
2
replies
886
views
UCSC "chromEnd larger than chrom chr21 size (46750259 > 46709983)" error
bed customtracks peakcall UCSC
updated 3.5 years ago by 147k • written 3.5 years ago by ▴ 130
0
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0
replies
1.1k
views
Comment: C: HOMER known motif is unpublished
3.8 years ago by buffealo ▴ 130
0
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2
replies
1.1k
views
HOMER known motif is unpublished
ChIP-Seq motif HOMER motif finding known motifs
3.8 years ago by buffealo ▴ 130
46 results • Page 1 of 1
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