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4
votes
10
replies
3.6k
views
6 follow
VEP tab/vcf - Different output
VEP ensembl
updated 15 months ago by 45k • written 3.0 years ago by ▴ 100
0
votes
1
reply
989
views
CADD INDEL FILE
INDEL CADD
updated 15 months ago by • 0 • written 3.7 years ago by ▴ 100
0
votes
1
reply
898
views
Loftee no splice site annotations
Loftee VEP
updated 16 months ago by • 0 • written 3.1 years ago by ▴ 100
0
votes
0
replies
523
views
Training gkm-svm sequence length
dnaseseq gkm-svm deltasvm
2.1 years ago by Filago ▴ 100
0
votes
1
reply
673
views
Filter VEP for same entry
VEP
updated 2.2 years ago by ★ 2.4k • written 2.2 years ago by ▴ 100
0
votes
0
replies
436
views
When to remove releated samples in GATK
GATK
2.3 years ago by Filago ▴ 100
0
votes
0
replies
974
views
MACS2 not working in paired end mode
NGS bowtie2 macs2 peak calling
2.4 years ago by Filago ▴ 100
1
vote
1
reply
776
views
Answer: Answer: GATK 3.8 do not exclude annotations
2.5 years ago by Filago ▴ 100
1
vote
2
replies
776
views
GATK 3.8 do not exclude annotations
GATK3
updated 2.5 years ago by 45k • written 2.5 years ago by ▴ 100
0
votes
1
reply
1.5k
views
Comment: Comment: Install GATK 3.8 with conda
updated 2.5 years ago by 45k • written 2.5 years ago by ▴ 100
1
vote
3
replies
1.5k
views
Install GATK 3.8 with conda
GS GATK
updated 2.5 years ago by 45k • written 2.5 years ago by ▴ 100
0
votes
0
replies
595
views
gnomAD RF filter
gnomAD VCF NGS
2.6 years ago by Filago ▴ 100
0
votes
0
replies
1.6k
views
Comment: Comment: VEP v107 installation problem - CHECKSUMS
2.7 years ago by Filago ▴ 100
0
votes
1
reply
1.6k
views
Comment: Comment: VEP v107 installation problem - CHECKSUMS
2.7 years ago by Filago ▴ 100
2
votes
5
replies
1.6k
views
VEP v107 installation problem - CHECKSUMS
ENSEMBL VEP
2.7 years ago by Filago ▴ 100
0
votes
0
replies
747
views
Comment: Comment: Which tool for CRM enrichment?
2.7 years ago by Filago ▴ 100
0
votes
2
replies
747
views
Which tool for CRM enrichment?
CRM TFBS
2.7 years ago by Filago ▴ 100
0
votes
1
reply
1.0k
views
Comment: Comment: VEP Could not get current species list - using predefined list instead
2.9 years ago by Filago ▴ 100
0
votes
3
replies
1.0k
views
VEP Could not get current species list - using predefined list instead
Ensembl VEP
updated 2.9 years ago by ★ 2.4k • written 2.9 years ago by ▴ 100
0
votes
0
replies
485
views
DBD::mysql required for VEP installation?
VEP Perl
2.9 years ago by Filago ▴ 100
0
votes
0
replies
522
views
BCFTOOLS filter per sample per variant
VCF bcftools
2.9 years ago by Filago ▴ 100
0
votes
1
reply
3.6k
views
Comment: Comment: VEP tab/vcf - Different output
3.0 years ago by Filago ▴ 100
0
votes
0
replies
500
views
VEP polypen humvar and humdiv
Polyphen VEP
3.0 years ago by Filago ▴ 100
0
votes
0
replies
4.0k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.1 years ago by Filago ▴ 100
0
votes
1
reply
4.0k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.1 years ago by Filago ▴ 100
0
votes
0
replies
4.0k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.1 years ago by Filago ▴ 100
0
votes
1
reply
4.0k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.1 years ago by Filago ▴ 100
0
votes
1
reply
4.0k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
3.1 years ago by Filago ▴ 100
2
votes
7
replies
4.0k
views
VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip
VEP
updated 3.1 years ago by 12k • written 3.1 years ago by ▴ 100
1
vote
0
replies
2.5k
views
Comment: Comment: VEP: MSG: ERROR: Cannot use format vcf without Bio::DB::HTS::Tabix module instal
3.1 years ago by Filago ▴ 100
0
votes
0
replies
480
views
Freebayes ABP
Freebayes
3.1 years ago by Filago ▴ 100
2
votes
0
replies
6.8k
views
Comment: Comment: TMM-Normalization
3.4 years ago by Filago ▴ 100
1
vote
2
replies
2.5k
views
VEP: MSG: ERROR: Cannot use format vcf without Bio::DB::HTS::Tabix module installed
VCF Ensembl gnomAD VEP
3.1 years ago by Filago ▴ 100
1
vote
0
replies
701
views
Weighted random walk in R
Walk Ranwom R Graph
3.7 years ago by Filago ▴ 100
0
votes
1
reply
3.0k
views
Comment: Comment: Get REVEL plugin started with VEP
3.7 years ago by Filago ▴ 100
1
vote
3
replies
3.0k
views
Get REVEL plugin started with VEP
VCF REVEL VEP
updated 3.7 years ago by • 0 • written 3.7 years ago by ▴ 100
0
votes
0
replies
2.6k
views
Comment: Comment: 1000 Genomes exomes as controls
3.8 years ago by Filago ▴ 100
0
votes
0
replies
762
views
COLOC.abf priors
COLOC
3.8 years ago by Filago ▴ 100
4
votes
2
replies
896
views
Remote access- data security
Remote-Access
updated 3.8 years ago by ★ 3.4k • written 3.8 years ago by ▴ 100
0
votes
1
reply
3.0k
views
Comment: Comment: plink2 reorder alleles by fasta reference
3.8 years ago by Filago ▴ 100
0
votes
1
reply
3.0k
views
Comment: Comment: plink2 reorder alleles by fasta reference
3.8 years ago by Filago ▴ 100
0
votes
5
replies
3.0k
views
plink2 reorder alleles by fasta reference
PLINK2
updated 3.8 years ago by 11k • written 3.8 years ago by ▴ 100
0
votes
0
replies
1.8k
views
Answer: Answer: Corrupted dbsnp-vcf?
3.8 years ago by Filago ▴ 100
0
votes
0
replies
1.8k
views
Comment: Comment: Corrupted dbsnp-vcf?
3.8 years ago by Filago ▴ 100
0
votes
3
replies
1.8k
views
Corrupted dbsnp-vcf?
BCFTOOLS VCF Imputation
3.8 years ago by Filago ▴ 100
6
votes
3
replies
7.0k
views
How to set up bcftools plugins?
BCFTOOLS
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 100
1
vote
0
replies
1.1k
views
Colocalization window size
COLOC eqtl R gwas
updated 3.8 years ago by 12k • written 3.8 years ago by ▴ 100
0
votes
4
replies
1.4k
views
> 90% samples, DP > 10
VCF R DP
updated 3.8 years ago by ▴ 480 • written 3.9 years ago by ▴ 100
2
votes
1
reply
1.6k
views
Preparing data for kinship calculations
PRUNING VCF PLINK2 KING
updated 3.8 years ago by 45k • written 3.8 years ago by ▴ 100
1
vote
1
reply
819
views
Subset genomic intervals by other intervals
R
updated 3.9 years ago by 150k • written 3.9 years ago by ▴ 100
62 results • Page 1 of 2
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