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4
votes
10
replies
3.1k
views
6 follow
VEP tab/vcf - Different output
VEP ensembl
updated 11 months ago by 44k • written 2.7 years ago by ▴ 100
0
votes
1
reply
915
views
CADD INDEL FILE
INDEL CADD
updated 12 months ago by • 0 • written 3.5 years ago by ▴ 100
0
votes
1
reply
739
views
Loftee no splice site annotations
Loftee VEP
updated 13 months ago by • 0 • written 2.8 years ago by ▴ 100
0
votes
0
replies
480
views
Training gkm-svm sequence length
dnaseseq gkm-svm deltasvm
22 months ago by Filago ▴ 100
0
votes
1
reply
610
views
Filter VEP for same entry
VEP
updated 23 months ago by ★ 2.3k • written 23 months ago by ▴ 100
0
votes
0
replies
400
views
When to remove releated samples in GATK
GATK
2.0 years ago by Filago ▴ 100
0
votes
0
replies
875
views
MACS2 not working in paired end mode
NGS bowtie2 macs2 peak calling
2.2 years ago by Filago ▴ 100
1
vote
1
reply
694
views
Answer: Answer: GATK 3.8 do not exclude annotations
2.2 years ago by Filago ▴ 100
1
vote
2
replies
694
views
GATK 3.8 do not exclude annotations
GATK3
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: Install GATK 3.8 with conda
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 100
1
vote
3
replies
1.3k
views
Install GATK 3.8 with conda
GS GATK
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 100
0
votes
0
replies
538
views
gnomAD RF filter
gnomAD VCF NGS
2.3 years ago by Filago ▴ 100
0
votes
0
replies
1.4k
views
Comment: Comment: VEP v107 installation problem - CHECKSUMS
2.4 years ago by Filago ▴ 100
0
votes
1
reply
1.4k
views
Comment: Comment: VEP v107 installation problem - CHECKSUMS
2.5 years ago by Filago ▴ 100
2
votes
5
replies
1.4k
views
VEP v107 installation problem - CHECKSUMS
ENSEMBL VEP
2.4 years ago by Filago ▴ 100
0
votes
0
replies
654
views
Comment: Comment: Which tool for CRM enrichment?
2.5 years ago by Filago ▴ 100
0
votes
2
replies
654
views
Which tool for CRM enrichment?
CRM TFBS
2.5 years ago by Filago ▴ 100
0
votes
1
reply
876
views
Comment: Comment: VEP Could not get current species list - using predefined list instead
2.6 years ago by Filago ▴ 100
0
votes
3
replies
876
views
VEP Could not get current species list - using predefined list instead
Ensembl VEP
updated 2.6 years ago by ★ 2.4k • written 2.6 years ago by ▴ 100
0
votes
0
replies
429
views
DBD::mysql required for VEP installation?
VEP Perl
2.6 years ago by Filago ▴ 100
0
votes
0
replies
468
views
BCFTOOLS filter per sample per variant
VCF bcftools
2.6 years ago by Filago ▴ 100
0
votes
1
reply
3.1k
views
Comment: Comment: VEP tab/vcf - Different output
2.7 years ago by Filago ▴ 100
0
votes
0
replies
457
views
VEP polypen humvar and humdiv
Polyphen VEP
2.8 years ago by Filago ▴ 100
0
votes
0
replies
3.6k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
2.8 years ago by Filago ▴ 100
0
votes
1
reply
3.6k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
2.8 years ago by Filago ▴ 100
0
votes
0
replies
3.6k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
2.8 years ago by Filago ▴ 100
0
votes
1
reply
3.6k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
2.8 years ago by Filago ▴ 100
0
votes
1
reply
3.6k
views
Comment: Comment: VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgz
2.8 years ago by Filago ▴ 100
2
votes
7
replies
3.6k
views
VEP [E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip
VEP
updated 2.8 years ago by 12k • written 2.8 years ago by ▴ 100
1
vote
0
replies
2.3k
views
Comment: Comment: VEP: MSG: ERROR: Cannot use format vcf without Bio::DB::HTS::Tabix module instal
2.8 years ago by Filago ▴ 100
0
votes
0
replies
410
views
Freebayes ABP
Freebayes
2.8 years ago by Filago ▴ 100
2
votes
0
replies
6.3k
views
Comment: Comment: TMM-Normalization
3.2 years ago by Filago ▴ 100
1
vote
2
replies
2.3k
views
VEP: MSG: ERROR: Cannot use format vcf without Bio::DB::HTS::Tabix module installed
VCF Ensembl gnomAD VEP
2.8 years ago by Filago ▴ 100
1
vote
0
replies
637
views
Weighted random walk in R
Walk Ranwom R Graph
3.4 years ago by Filago ▴ 100
0
votes
1
reply
2.8k
views
Comment: Comment: Get REVEL plugin started with VEP
3.5 years ago by Filago ▴ 100
1
vote
3
replies
2.8k
views
Get REVEL plugin started with VEP
VCF REVEL VEP
updated 3.4 years ago by • 0 • written 3.5 years ago by ▴ 100
0
votes
0
replies
2.5k
views
Comment: Comment: 1000 Genomes exomes as controls
3.5 years ago by Filago ▴ 100
0
votes
0
replies
698
views
COLOC.abf priors
COLOC
3.5 years ago by Filago ▴ 100
4
votes
2
replies
808
views
Remote access- data security
Remote-Access
updated 3.6 years ago by ★ 3.4k • written 3.6 years ago by ▴ 100
0
votes
1
reply
2.7k
views
Comment: Comment: plink2 reorder alleles by fasta reference
3.6 years ago by Filago ▴ 100
0
votes
1
reply
2.7k
views
Comment: Comment: plink2 reorder alleles by fasta reference
3.6 years ago by Filago ▴ 100
0
votes
5
replies
2.7k
views
plink2 reorder alleles by fasta reference
PLINK2
updated 3.6 years ago by 11k • written 3.6 years ago by ▴ 100
0
votes
0
replies
1.6k
views
Answer: Answer: Corrupted dbsnp-vcf?
3.6 years ago by Filago ▴ 100
0
votes
0
replies
1.6k
views
Comment: Comment: Corrupted dbsnp-vcf?
3.6 years ago by Filago ▴ 100
0
votes
3
replies
1.6k
views
Corrupted dbsnp-vcf?
BCFTOOLS VCF Imputation
3.6 years ago by Filago ▴ 100
6
votes
3
replies
6.5k
views
How to set up bcftools plugins?
BCFTOOLS
updated 3.6 years ago by 86k • written 3.6 years ago by ▴ 100
1
vote
0
replies
992
views
Colocalization window size
COLOC eqtl R gwas
updated 3.6 years ago by 12k • written 3.6 years ago by ▴ 100
0
votes
4
replies
1.3k
views
> 90% samples, DP > 10
VCF R DP
updated 3.6 years ago by ▴ 480 • written 3.6 years ago by ▴ 100
2
votes
1
reply
1.4k
views
Preparing data for kinship calculations
PRUNING VCF PLINK2 KING
updated 3.6 years ago by 44k • written 3.6 years ago by ▴ 100
1
vote
1
reply
735
views
Subset genomic intervals by other intervals
R
updated 3.6 years ago by 148k • written 3.6 years ago by ▴ 100
62 results • Page 1 of 2
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